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BioLiP
>protein
EAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENDPVLQRIVDILYAT

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6evq:A 70 58 0.9815 0.7571 0.9138 1.63e-30 6evq:B, 3gjo:A, 3gjo:B, 3gjo:C, 3gjo:D, 5n74:A, 5n74:B, 5n74:C, 5n74:D, 5n74:E, 5n74:F, 5n74:G, 5n74:H, 7olg:A, 7olg:B
2 5m9e:B 71 48 0.4074 0.3099 0.4583 5.86e-07 5m9e:A, 5m9e:C, 5m9e:D
3 4eot:A 92 26 0.2593 0.1522 0.5385 0.74 4eot:B
4 2wty:B 97 26 0.2407 0.1340 0.5000 1.2 4auw:A, 4auw:B, 4auw:E, 4auw:F, 2wt7:B, 2wty:A
5 5l8e:A 517 32 0.2407 0.0251 0.4062 1.3
6 7myl:B 158 24 0.1852 0.0633 0.4167 2.1 5ecc:A, 5ecc:B, 5ecx:A, 5ecx:B, 7myl:A, 7myl:C, 7myl:D, 7myl:E, 7myl:F, 7reg:A, 7reg:B, 7rgj:A, 7rgj:B
7 2dq0:A 447 33 0.2037 0.0246 0.3333 2.4 2dq0:B, 2zr2:A, 2zr2:B
8 3acw:A 284 29 0.2407 0.0458 0.4483 2.9 3acx:A, 3acy:A, 3adz:A, 3ae0:A, 3ae0:B, 4e9u:A, 4e9z:A, 4ea0:A, 4ea0:B, 4ea1:A, 4ea2:A, 4f6v:A, 4f6x:A, 3lgz:B, 3npr:A, 3nri:A, 3tfn:A, 3tfp:A, 3tfv:A, 3vje:A, 3vje:B, 3w7f:A, 3w7f:B, 2zcq:A, 2zcr:A, 2zcs:A, 2zy1:A
9 7lye:A 122 38 0.2037 0.0902 0.2895 6.2 7lye:B, 7lye:C, 7lye:D
10 3bjw:A 122 36 0.2037 0.0902 0.3056 6.3 3bjw:E, 3bjw:G, 3bjw:B, 3bjw:F, 3bjw:C, 3bjw:D, 3bjw:H, 2qhd:A, 2qhd:B
11 2ggq:A 401 38 0.1667 0.0224 0.2368 8.2 5z09:A, 5z09:B, 5z09:C, 5z09:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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