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BioLiP
>protein
DYSGEIAELYDLVHQGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRN
PDAVLHHGDMRDFSLGRRFSAVTCMFSAIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGG
TTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLPG

The query sequence (length=237) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4oqd:C 241 237 0.9958 0.9793 0.9958 1.89e-174 6m81:A, 6m81:B, 6m81:C, 6m81:D, 6m82:A, 6m83:A, 4oqd:A, 4oqd:B, 4oqd:D, 4oqe:A, 4oqe:B, 3pfg:A, 3pfh:A, 3pfh:D, 3px2:A, 3px2:D, 3px3:A, 3px3:D
2 3bxo:A 236 235 0.5992 0.6017 0.6043 3.02e-99 3bxo:B
3 6uk5:A 240 232 0.4852 0.4792 0.4957 9.60e-71 6uk5:B
4 5bsz:A 247 235 0.4304 0.4130 0.4340 2.95e-52
5 1wzn:A 244 143 0.1730 0.1680 0.2867 4.66e-10 1wzn:B, 1wzn:C
6 3h2b:B 196 82 0.1266 0.1531 0.3659 1.80e-06 3h2b:A
7 7wzf:A 243 117 0.1350 0.1317 0.2735 2.77e-06
8 1nbh:A 292 152 0.1857 0.1507 0.2895 3.78e-06 1d2h:A, 1d2h:B, 1d2h:C, 1d2h:D, 2idk:B, 2idk:C, 2idk:D, 2idk:A, 1kia:A, 1kia:B, 1kia:C, 1kia:D, 1nbh:B, 1nbh:C, 1nbh:D, 1nbi:A, 1nbi:B, 1nbi:C, 1nbi:D, 3thr:A, 3thr:B, 3thr:C, 3thr:D, 3ths:B, 3ths:C, 3ths:D, 3ths:A, 1xva:A, 1xva:B
9 7wzg:B 243 141 0.1772 0.1728 0.2979 1.82e-04 7wzg:A, 7wzg:C, 7wzg:D, 7wzg:E, 7wzg:F
10 5dpl:A 520 127 0.1139 0.0519 0.2126 3.83e-04 5doo:A, 5dpl:B
11 2gs9:A 211 75 0.1224 0.1374 0.3867 4.90e-04 2gs9:B
12 1ve3:B 226 124 0.1266 0.1327 0.2419 0.001 1ve3:A
13 7qcb:A 240 58 0.1097 0.1083 0.4483 0.001
14 8khq:A 700 69 0.0886 0.0300 0.3043 0.002 8khq:B, 8khq:C, 8khq:D
15 4ine:A 431 40 0.0802 0.0441 0.4750 0.003 4ine:B
16 5h02:A 252 149 0.1688 0.1587 0.2685 0.004 5gwx:A, 5hik:A, 5hil:A, 5him:A
17 3g2p:A 251 117 0.1477 0.1394 0.2991 0.005 3g2o:A, 3g2o:B, 3g2p:B, 3g2q:A, 3g2q:B
18 7zkh:A 266 130 0.1603 0.1429 0.2923 0.007 7zkg:A, 7zkg:B
19 1ri1:A 252 118 0.1224 0.1151 0.2458 0.010 2hv9:A, 1ri2:A, 1ri3:A, 1ri4:A, 1z3c:A
20 3ou7:A 214 95 0.1308 0.1449 0.3263 0.010 3ou2:A, 3ou6:A, 3ou6:B, 3ou6:C, 3ou6:D, 3ou7:B, 3ou7:C, 3ou7:D
21 7wtt:q 235 53 0.0886 0.0894 0.3962 0.019 6g4w:q, 7wts:q, 7wtu:q, 7wtv:q, 7wtw:q
22 3ggd:A 243 46 0.0717 0.0700 0.3696 0.023
23 5z9o:A 373 230 0.2194 0.1394 0.2261 0.024 5z9o:B
24 7ux7:A 378 192 0.2278 0.1429 0.2812 0.053 7ux6:A, 7ux6:B, 7ux7:B, 7ux8:A, 7ux8:B
25 4nec:B 244 80 0.0970 0.0943 0.2875 0.064 4nec:A, 4nec:C, 4nec:D
26 4iv8:A 245 103 0.1097 0.1061 0.2524 0.083 4iv8:B
27 5dm2:A 258 109 0.0970 0.0891 0.2110 0.086 5dm1:A, 5dm4:A, 4kwc:A
28 1p91:A 268 62 0.0844 0.0746 0.3226 0.26 1p91:B
29 7pd7:B 250 97 0.1055 0.1000 0.2577 0.31 7pd7:A, 7pd7:C, 7pd7:D
30 2avn:A 247 138 0.1350 0.1296 0.2319 0.35 2avn:B
31 5dm0:B 272 45 0.0591 0.0515 0.3111 0.92 5dly:A, 5dm0:A, 4kvz:A
32 8xmc:B 1082 134 0.1477 0.0323 0.2612 1.2 7eu1:B, 8xmb:B
33 4hh4:C 256 104 0.1308 0.1211 0.2981 1.7 4hh4:A, 4hh4:B, 4hh4:D, 4hh4:E, 4hh4:F
34 2o5c:A 634 119 0.1308 0.0489 0.2605 1.7 1i7d:A, 2o19:A, 2o19:B, 2o54:A, 2o54:B, 2o59:A, 2o59:B, 2o5c:B, 2o5e:A, 2o5e:B
35 3sxj:A 245 37 0.0591 0.0571 0.3784 1.8 3sxj:B, 3t0i:A, 3t0i:B
36 5u1e:A 321 79 0.0970 0.0717 0.2911 2.3 5tyq:A, 5u0n:A, 5u0t:A, 5u18:A, 5u19:A, 5u1i:A, 5u4t:A
37 8xmd:B 1061 70 0.0759 0.0170 0.2571 3.0 7eu0:B, 8hyj:B, 8xme:B
38 3ly1:D 354 42 0.0549 0.0367 0.3095 3.7 3ly1:A, 3ly1:B, 3ly1:C
39 5fcd:A 228 43 0.0591 0.0614 0.3256 4.3 5fcd:B
40 4f9j:A 599 80 0.0928 0.0367 0.2750 4.6 4f9d:A, 4f9d:B, 4f9j:B, 4p7n:A, 4p7q:A, 4p7r:A, 3vus:A, 3vus:B
41 4kdr:A 208 37 0.0549 0.0625 0.3514 4.6 5dpm:A
42 7yst:A 312 108 0.1266 0.0962 0.2778 5.8 7ys8:A, 7ys8:B, 7ys9:A, 7ys9:B, 7ysa:A, 7ysa:B, 7ysm:A, 7ysm:B, 7yst:B, 7ysy:A, 7ysy:B, 7yt0:A, 7yt0:B
43 4pne:B 272 96 0.1224 0.1066 0.3021 5.9 4pne:A
44 5gm2:B 282 50 0.0802 0.0674 0.3800 6.4 5gm1:A, 5gm1:B, 5gm1:C, 5gm1:D, 5gm1:E, 5gm1:F, 5gm1:G, 5gm1:H, 5gm1:I, 5gm1:J, 5gm1:K, 5gm1:L, 5gm1:M, 5gm1:N, 5gm1:O, 5gm1:P, 5gm1:Q, 5gm1:R, 5gm2:A, 5gm2:C, 5gm2:D, 5gm2:E, 5gm2:F, 5gm2:G, 5gm2:H, 5gm2:I, 5gm2:J, 5gm2:L, 5gm2:M, 5gm2:N, 5gm2:O, 5gm2:P, 5gm2:Q, 5gm2:R
45 1u3c:A 485 86 0.1181 0.0577 0.3256 6.4 1u3d:A
46 1zg3:A 358 61 0.0633 0.0419 0.2459 6.9 1zga:A, 1zgj:A, 1zhf:A
47 3hem:A 291 46 0.0717 0.0584 0.3696 8.4 1kpi:A
48 3htx:D 795 52 0.0759 0.0226 0.3462 8.7 3htx:A
49 8him:B 971 73 0.0844 0.0206 0.2740 9.4
50 6cx6:B 333 46 0.0633 0.0450 0.3261 9.9 6cx6:A, 5eg5:A, 4fr0:A, 4fsd:A, 4kw7:A, 4rsr:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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