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BioLiP
>protein
DYQRINEYLTSIFNNVLVIEEVNLRGSRFKDISIKEMHTIDVIGKAPDVTPSQVSKELMVTLGTVTTSLNNLERKGYIER
VRSEQDRRVVHLHLTKKGRLIHRLHKRFHKAMVEKIIDGMSEEEIAVMGKGLTNLYQFLEDLK

The query sequence (length=143) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6jbx:A 146 143 1.0000 0.9795 1.0000 1.28e-102 6jbx:B
2 5h3r:A 141 99 0.1958 0.1986 0.2828 4.10e-08 5h3r:B
3 3q5f:A 141 112 0.2308 0.2340 0.2946 2.85e-06 3q5f:B
4 1z9c:C 138 95 0.2098 0.2174 0.3158 1.52e-04 1z9c:A, 1z9c:B, 1z9c:D, 1z9c:E, 1z9c:F
5 7kfq:A 141 96 0.1608 0.1631 0.2396 2.41e-04 7kfo:A, 7kh3:A, 7kig:A, 7kjq:A, 7kk0:A, 7kkc:A, 7kki:A
6 4aij:B 142 105 0.1958 0.1972 0.2667 2.72e-04 4aij:A, 4aik:A
7 6fi9:A 144 89 0.1608 0.1597 0.2584 0.002 6fi9:B, 6fi9:C, 6fi9:D, 6fi9:E, 6fi9:F, 6fi9:G, 6fi9:H
8 5yhx:N 146 89 0.1608 0.1575 0.2584 0.002 5yhx:A, 5yhx:B, 5yhx:G, 5yhx:H, 5yhx:M, 5yhx:S, 5yhx:T, 5yhy:A, 5yhz:A, 5yi0:B, 5yi0:A, 5yi0:C, 5yi0:D, 5yi2:A, 5yi2:B, 5yi2:E, 5yi2:F, 5yi2:I, 5yi2:J, 5yi2:M, 5yi2:N, 5yi3:A, 5yi3:B, 5yi3:E, 5yi3:F, 5yi3:I, 5yi3:J, 5yi3:M, 5yi3:N
9 6c2s:A 142 56 0.1538 0.1549 0.3929 0.005 6c28:A, 6c28:D, 6c28:B, 6c28:C, 6c2s:D, 6c2s:B, 6c2s:C
10 4xrf:A 142 48 0.1119 0.1127 0.3333 0.051
11 5hli:A 146 50 0.1049 0.1027 0.3000 0.11 5hlg:A, 5hlg:B, 5hlg:C, 5hlg:D, 5hlg:E, 5hlg:F, 5hlg:G, 5hlg:H, 5hlh:A, 5hlh:B, 5hlh:C, 5hlh:D, 5hlh:E, 5hlh:F, 5hlh:G, 5hlh:H, 5hli:B
12 7dvr:A 147 100 0.1818 0.1769 0.2600 0.15 7dvt:A, 7dvu:A, 7dvv:A, 7dvv:B
13 1fx7:A 230 81 0.1748 0.1087 0.3086 0.45 1b1b:A, 1fx7:B, 1fx7:C, 1fx7:D, 2isz:A, 2isz:B, 2isz:C, 2isz:D, 2it0:A, 2it0:B, 2it0:C, 2it0:D, 1u8r:A, 1u8r:B, 1u8r:C, 1u8r:D, 1u8r:G, 1u8r:H, 1u8r:I, 1u8r:J
14 3ech:B 135 94 0.1469 0.1556 0.2234 1.6 3ech:A
15 5aip:A 141 35 0.0909 0.0922 0.3714 1.8 5aip:B
16 5ds0:C 359 64 0.1119 0.0446 0.2500 1.8 5ds0:A, 5ds0:B, 5ds0:D, 5ds0:E, 5ds0:F, 5ds0:G, 5ds0:H, 5ds0:I, 5ds0:J, 5ds0:K, 5ds0:L
17 1mkm:A 246 70 0.1259 0.0732 0.2571 7.5
18 2jby:A 127 38 0.1049 0.1181 0.3947 7.8
19 3hsr:B 133 39 0.0979 0.1053 0.3590 8.6 3hsr:A, 3hsr:C, 3hsr:D
20 3zpl:E 160 80 0.1189 0.1062 0.2125 9.4 3zpl:A, 3zpl:B, 3zpl:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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