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BioLiP
>protein
DYLDRLPKSKKGLQGLLQDIEKRILHYKQLFFKEQNEIANGKRSMVPDNSIPICSDVTKLNFQALIDAQMRHAGKMFDVI
MMDPPWQDSLSDEKIQNMPIQSLQQDGFIFVWAINAKYRVTIKMIENWGYKLVDEITWVKAKESCLIGVKGDVDNGRFKK
NIASDVIFSERRGQSQKPEEIYQYINQLCPNGNYLEIFARRNNLHDNWVSIGNEL

The query sequence (length=215) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7f4m:D 216 215 1.0000 0.9954 1.0000 6.04e-162 7f4l:C, 7f4m:C, 7f4n:C, 7f4n:D
2 7yi8:B 223 223 0.9395 0.9058 0.9058 2.13e-145 7f4p:A, 7f4q:A, 7f4t:A, 7f4t:E, 7f4t:H, 7f4t:K, 7yi9:B
3 5k7u:A 208 189 0.3070 0.3173 0.3492 4.13e-32 7acd:A, 8bn8:AAA, 5il1:A, 5il2:A, 5k7w:A, 5l6d:A, 5l6e:A, 7nhg:A, 7nhh:A, 7nhi:A, 7nhj:A, 7nhv:A, 7ni7:A, 7ni8:A, 7ni9:A, 7nia:A, 7nid:A, 7o08:A, 7o09:A, 7o0l:A, 7o0m:A, 7o0p:A, 7o0q:A, 7o0r:A, 7o27:A, 7o28:A, 7o29:A, 7o2e:A, 7o2f:A, 7o2h:A, 7o2i:A, 7o2x:A, 7oed:A, 7oee:A, 7oef:A, 7oeg:A, 7oeh:A, 7oei:A, 7oej:A, 7oek:A, 7oel:A, 7oem:A, 7oql:A, 7oqo:A, 7oqp:A, 8pw8:A, 8pw9:A, 8pwa:A, 8pwb:A, 5tey:A, 6ttp:A, 6ttt:A, 6ttv:A, 6ttw:A, 6ttx:A, 6tu1:A, 6y4g:A
4 7ni7:B 246 195 0.2372 0.2073 0.2615 9.76e-14 7acd:B, 7nhh:B, 7o0q:B, 7oem:B, 8pwa:B
5 7cv9:A 356 210 0.2419 0.1461 0.2476 1.42e-05 7cv6:B, 7cv7:A, 7cv7:B
6 7cv9:C 351 220 0.2372 0.1453 0.2318 1.49e-04 7cv8:A, 7dpe:A
7 8kdb:A 2117 102 0.1163 0.0118 0.2451 0.096 8kdc:A
8 1flg:A 582 66 0.0930 0.0344 0.3030 1.2 1flg:B
9 5ybb:A 487 46 0.0605 0.0267 0.2826 1.2 5ybb:B
10 7myv:B 239 78 0.0977 0.0879 0.2692 1.3 7myv:A
11 8w1o:K 1290 96 0.1163 0.0194 0.2604 1.6
12 8c56:A 388 135 0.1488 0.0825 0.2370 1.7 8c57:A, 8c58:A, 8c59:A, 4dkj:A
13 4h83:F 368 72 0.0977 0.0571 0.2917 2.4 4h83:A, 3no1:A, 3no1:B, 3no1:C, 3no1:D, 3no1:E, 3no1:F
14 3bry:A 389 129 0.1442 0.0797 0.2403 2.8 3bry:B
15 3fxb:A 310 86 0.0791 0.0548 0.1977 3.0 3fxb:B
16 7lcc:A 1369 41 0.0651 0.0102 0.3415 5.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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