Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DWPRQITDSRGTHTLESQPQRIVSTSVTLTGSLLAIDAPVIASGATTPNNRVADDQGFLRQWSKVAKERKLQRLYIGEPS
AEAVAAQMPDLILISATGGDSALALYDQLSTIAPTLIINYDDKSWQSLLTQLGEITGHEKQAAERIAQFDKQLAAAKEQI
KLPPQPVTAIVYTAAAHSANLWTPESAQGQMLEQLGFTLAKLPAGLNASQSQGKRHDIIQLGGENLAAGLNGESLFLFAG
DQKDADAIYANPLLAHLPAVQNKQVYALGTETFRLDYYSAMQVLDRLKALF

The query sequence (length=291) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3tlk:A 296 291 1.0000 0.9831 1.0000 0.0 3tlk:C, 3tlk:B
2 3r5t:A 296 292 0.3677 0.3615 0.3664 4.40e-55
3 3mwf:A 292 228 0.2165 0.2158 0.2763 5.97e-10
4 5ad1:A 290 311 0.2371 0.2379 0.2219 1.69e-09 5a1j:A, 5a5d:A, 5a5v:A, 5adv:A, 5adv:B, 5adv:C, 5adw:A, 5adw:B, 5adw:C, 2chu:A, 2chu:B, 5lwh:A, 5oah:A, 5oah:B, 5od5:A, 5od5:C, 5tcy:A, 5tcy:B, 5tcy:C
5 5jj5:A 308 280 0.2337 0.2208 0.2429 1.75e-08 4hmq:A, 4hmq:B, 5jj5:B
6 3lhs:A 291 271 0.2302 0.2302 0.2472 2.57e-08 3li2:A, 3li2:B
7 4b8y:A 277 154 0.1443 0.1516 0.2727 6.18e-07 4fil:A, 4fil:B, 4fil:C, 4fil:D
8 7w8f:A 278 165 0.1787 0.1871 0.3152 1.43e-06
9 8bax:A 281 84 0.0962 0.0996 0.3333 2.53e-06 8b7x:A, 8baw:A, 8baw:B
10 6mfl:A 284 184 0.1478 0.1514 0.2337 2.83e-06 6mfl:B
11 3tny:A 280 200 0.1546 0.1607 0.2250 3.47e-06
12 7sf6:A 294 224 0.1924 0.1905 0.2500 5.93e-06
13 3gfv:B 285 210 0.1753 0.1789 0.2429 2.23e-05
14 8bf6:A 278 123 0.1237 0.1295 0.2927 2.94e-04 8bj9:A
15 2q8p:A 258 276 0.2371 0.2674 0.2500 5.25e-04 2q8q:A
16 5cr9:A 290 212 0.1856 0.1862 0.2547 6.50e-04
17 2why:A 283 198 0.1718 0.1767 0.2525 0.001 2xuz:A, 2xv1:A
18 1efd:N 262 191 0.1546 0.1718 0.2356 0.004 1esz:A, 1k2v:N, 1k7s:N
19 7fhp:A 292 159 0.1409 0.1404 0.2579 0.070
20 1pk2:A 90 72 0.0722 0.2333 0.2917 0.63
21 7sn8:I 634 84 0.0722 0.0331 0.2500 1.1
22 6bhq:A 208 70 0.0722 0.1010 0.3000 1.1 6bhq:B
23 1igt:B 444 72 0.0756 0.0495 0.3056 1.4 1igt:D, 2otu:B, 2otu:D, 2otu:F, 2otu:H, 2otw:B, 2otw:D, 2qhr:H, 6uqc:C, 6uqc:D, 6uqc:F, 5vaa:A, 5vaa:B, 3zo0:A
24 6mnr:L 211 50 0.0584 0.0806 0.3400 3.1 6mns:L, 6mns:B
25 5ftz:A 172 50 0.0481 0.0814 0.2800 3.7
26 6kru:A 208 70 0.0722 0.1010 0.3000 3.7 6kru:B, 6kru:C, 6kru:D, 6kru:E, 6kru:F, 6krv:C, 2rgs:A, 2rgs:B, 5ubx:B
27 5ggx:D 267 133 0.1203 0.1311 0.2632 4.1 5ggx:A, 5ggx:B, 5ggx:C
28 3bc9:A 585 228 0.1924 0.0957 0.2456 4.6 3bcd:A, 3bcf:A
29 4ls3:A 302 40 0.0481 0.0464 0.3500 4.7 4ls3:B
30 7q8e:A 397 139 0.1237 0.0907 0.2590 8.7 6gs2:B, 6gs2:D, 6h5e:B, 6h5e:D, 7q8e:C
31 6dju:F 531 17 0.0344 0.0188 0.5882 9.6 6w6g:F

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218