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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DWKPQILAIICNWCSYAGADLAGGARIQYPPTVRAIRVMCTGRVDMLFILKAFVEGADGVLVSGCHFGDCHYLEGNYKAA
KRMFMIKNLLRNIGLDDRRFRMTFVSASEGAKWGMVMEDVTNTIKELGPSPIKEFKK

The query sequence (length=137) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7bkb:F 137 137 1.0000 1.0000 1.0000 5.84e-102 7bkb:f, 7bkc:F, 7bkc:f, 7bkd:F, 7bke:F
2 5odc:D 138 134 0.5182 0.5145 0.5299 4.31e-53 5odc:J, 5odh:D, 5odh:J, 5odi:D, 5odi:J, 5odq:D, 5odq:J, 5odr:D, 5odr:J
3 4ag5:D 270 85 0.1825 0.0926 0.2941 0.032
4 5okn:D 433 90 0.2044 0.0647 0.3111 0.048 4a9c:B, 5okn:C, 5okn:E, 5okn:F, 5okn:H, 6squ:B
5 5okn:G 402 87 0.1898 0.0647 0.2989 0.72 6squ:A
6 6oz6:C 322 64 0.1168 0.0497 0.2500 0.72 8cxr:C, 6oz6:B
7 7vmx:B 359 38 0.1022 0.0390 0.3684 1.6
8 3k30:A 684 124 0.2336 0.0468 0.2581 2.2 3k30:B
9 7paj:9 393 56 0.1095 0.0382 0.2679 3.5 7pak:9, 7pha:9, 7pi9:9, 7pip:9
10 5drv:A 131 23 0.0876 0.0916 0.5217 3.6
11 9ayh:A 1056 77 0.1533 0.0199 0.2727 4.0 9ayg:A, 9ayj:A, 9ayk:A, 9ayl:A
12 6c72:A 579 53 0.0876 0.0207 0.2264 6.0 6c72:B, 6c72:C
13 6ei9:A 306 31 0.0949 0.0425 0.4194 6.0 6ei9:B
14 6tf9:eP1 625 50 0.0949 0.0208 0.2600 6.7
15 8dht:A 440 42 0.1022 0.0318 0.3333 7.1 8dht:B, 8dht:C, 8dht:D
16 3ujm:A 117 64 0.1314 0.1538 0.2812 7.2 3ujm:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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