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BioLiP
>protein
DVTNAEKLVYKYTNIAHSANPMYEAPSITDGKIFFNRKFKTPSGKEAACASCHTNNPANVGKNIVTGKEIPPLAPRVNTK
RFTDIDKVEDEFTKHCNDILGADCSPSEKANFIAYLLTETKPT

The query sequence (length=123) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1e8e:A 124 123 1.0000 0.9919 1.0000 4.99e-89 1gu2:A, 1gu2:B, 1oae:A, 1oae:B
2 1dw0:A 112 72 0.2439 0.2679 0.4167 1.08e-16 1dw0:B, 1dw0:C, 1dw1:A, 1dw1:B, 1dw1:C, 1dw2:A, 1dw2:B, 1dw2:C, 1dw3:A, 1dw3:B, 1dw3:C
3 4eie:A 82 79 0.1789 0.2683 0.2785 4.9 4eif:A
4 2ebv:A 57 30 0.0894 0.1930 0.3667 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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