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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DVTALCHKIFLHIHGLISADRYSLFLVCEDSSKDKFLISRLFDVAEGSTLEEASNNCIRLEWNKGIVGHVAAFGEPLNIK
DAYEDPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEKDEKDFAEYLAFCGE

The query sequence (length=149) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2k31:A 149 149 1.0000 1.0000 1.0000 1.70e-110
2 2zmf:A 177 150 0.4497 0.3785 0.4467 4.99e-32 2zmf:B
3 3ibj:A 661 148 0.3691 0.0832 0.3716 3.24e-21 4c1i:A, 4c1i:B, 4c1i:C, 4c1i:D, 6c7d:A, 6c7d:B, 6c7d:C, 6c7d:D, 6c7e:A, 6c7e:B, 6c7e:C, 6c7e:D, 6c7f:A, 6c7f:B, 6c7f:C, 6c7g:A, 6c7g:B, 6c7g:C, 6c7g:D, 6c7i:A, 6c7i:B, 6c7i:C, 6c7i:D, 6c7j:A, 6c7j:B, 6c7j:C, 6c7j:D, 4d08:A, 4d08:B, 4d08:C, 4d08:D, 4d09:A, 4d09:B, 4d09:C, 4d09:D, 6ezf:A, 4htx:A, 4htx:B, 4htx:C, 4htx:D, 4htz:A, 4htz:B, 4htz:C, 4htz:D, 3itm:A, 3itm:B, 3itm:C, 3itm:D, 3itu:A, 3itu:B, 3itu:C, 3itu:D, 4jib:A, 4jib:B, 4jib:C, 4jib:D, 1mc0:A, 5tz3:A, 5tz3:B, 5tz3:C, 5tz3:D, 5tza:A, 5tza:B, 5tza:C, 5tza:D, 5tzc:A, 5tzc:B, 5tzc:C, 5tzc:D, 5tzh:A, 5tzh:B, 5tzh:C, 5tzh:D, 5tzw:A, 5tzw:B, 5tzw:C, 5tzw:D, 5tzx:A, 5tzx:B, 5tzx:C, 5tzx:D, 5tzz:A, 5tzz:B, 5tzz:C, 5tzz:D, 5u00:A, 5u00:B, 5u00:C, 5u00:D, 5u7d:A, 5u7d:B, 5u7d:C, 5u7i:A, 5u7i:B, 5u7i:C, 5u7i:D, 5u7j:A, 5u7j:B, 5u7j:C, 5u7j:D, 5u7k:A, 5u7k:B, 5u7k:C, 5u7k:D, 5u7l:A, 5u7l:B, 5u7l:C, 5vp0:A, 5vp0:B, 5vp0:C, 5vp1:A, 5vp1:B, 5vp1:C, 5xkm:A, 5xkm:B, 5xkm:C, 5xkm:D, 5xkm:E, 5xkm:F, 1z1l:A, 6znd:A, 6znd:B, 6zqz:A, 6zqz:B, 6zqz:C, 6zqz:D
4 4mcw:B 363 121 0.3221 0.1322 0.3967 8.99e-20 4mcw:A, 4mdz:A, 4mdz:B, 4me4:A, 4me4:B
5 8ulg:B 824 142 0.3490 0.0631 0.3662 9.72e-18 7jsn:B, 6mzb:B, 8ufi:B, 8ugb:B, 8ugs:B
6 8ulg:B 824 86 0.2081 0.0376 0.3605 3.05e-07 7jsn:B, 6mzb:B, 8ufi:B, 8ugb:B, 8ugs:B
7 8ulg:A 827 136 0.3356 0.0605 0.3676 5.46e-16 7jsn:A, 6mzb:A, 8ufi:A, 8ugb:A, 8ugs:A
8 8ulg:A 827 86 0.1946 0.0351 0.3372 6.01e-06 7jsn:A, 6mzb:A, 8ufi:A, 8ugb:A, 8ugs:A
9 3dba:A 171 147 0.3020 0.2632 0.3061 4.11e-14 3dba:B
10 3ibj:B 643 91 0.2483 0.0575 0.4066 8.96e-14
11 1ykd:A 383 113 0.2819 0.1097 0.3717 1.07e-13 1ykd:B
12 1ykd:A 383 155 0.3289 0.1279 0.3161 2.28e-13 1ykd:B
13 5w10:A 173 119 0.2617 0.2254 0.3277 7.88e-11 5w10:B, 5w10:C, 5w10:D
14 7ri3:C 583 88 0.1745 0.0446 0.2955 0.25 7ri3:A, 7ri3:B, 7ri3:D
15 1fch:A 302 80 0.1342 0.0662 0.2500 0.46 1fch:B, 9gag:A
16 6rrp:B 450 51 0.1141 0.0378 0.3333 2.2
17 6eyv:A 459 51 0.1141 0.0370 0.3333 2.2 6eyv:B, 6rrp:A, 6rrq:A, 6rrq:B
18 8w2d:A 322 36 0.0738 0.0342 0.3056 3.8 8w2d:B
19 8jwf:A 1204 43 0.1074 0.0133 0.3721 6.0 8jwg:A, 8jwi:A
20 6voq:A 207 42 0.1007 0.0725 0.3571 9.7
21 3r1n:A 274 67 0.1208 0.0657 0.2687 9.9 3fhr:A, 3fxw:A, 7nrb:A, 3she:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218