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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DVSGTVCLSALPPEATDTLNLIASDGPFPYSQDGVVFQNRESVLPTQSYGYYHEYTVITPGARTRGTRRIITGEATQEDY
YTGDHYATFSLIDQTC

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1gmp:A 96 96 0.9896 0.9896 0.9896 9.26e-67 1gmp:B, 1gmr:A, 1gmr:B, 1rge:A, 1rsn:A, 1rsn:B, 2sar:A
2 3d5i:B 97 91 0.5625 0.5567 0.5934 3.10e-36 3d4a:B, 3dgy:A, 3dgy:B, 3dh2:A, 3dh2:B, 3dh2:C, 3dh2:D
3 1gov:A 108 79 0.2500 0.2222 0.3038 0.43 1gov:B, 1goy:A, 1goy:B
4 1rnb:A 109 80 0.2812 0.2477 0.3375 0.67 1a2p:C, 1b2z:C, 1brg:C, 1brh:C, 1brj:C, 1brk:C, 1brn:L, 1brn:M, 2f4y:C, 2f56:A, 2f56:B, 2f5m:B, 2f5m:C, 2f5w:C
5 1ucr:B 75 54 0.1458 0.1867 0.2593 6.8 1ucr:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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