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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DVPTPYACYFQDSATPNQEGILELHDNIMFYLLVILGLVSWMLYTIVMTYSKNPIAYKYIKHGQTIEVIWTIFPAVILLI
IAFPSFILLYLCDEVISPAMTIKAIGYQWYWKYEYSDFINDSGETVEFESYVIPDELLEEGQLRLLDTDTSMVVPVDTHI
RFVVTAADVIHDFAIPSLGIKVDATPGRLNQVSALIQREGVFYGACSELCGTGHANMPIKIEAVSLPKFLEWLNEQ

The query sequence (length=236) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8dh6:b 236 236 1.0000 1.0000 1.0000 3.46e-177 8e7s:P, 8e7s:p, 8ec0:P, 6giq:b, 6hu9:b, 6hu9:n, 6t0b:b, 6t0b:o, 6t15:b, 6ymx:b, 6ymy:b, 7z10:b
2 8c8q:B 238 238 0.5424 0.5378 0.5378 7.31e-93 8q1b:b
3 7jro:b 239 239 0.5381 0.5314 0.5314 5.53e-92 7jrp:b
4 5z62:B 227 220 0.3983 0.4141 0.4273 4.99e-62
5 3abk:B 227 228 0.4153 0.4317 0.4298 7.02e-59 3abk:O, 3abl:B, 3abl:O, 3abm:B, 3abm:O, 3ag1:B, 3ag1:O, 3ag2:B, 3ag2:O, 3ag3:B, 3ag3:O, 3ag4:B, 3ag4:O, 3asn:B, 3asn:O, 3aso:B, 3aso:O, 5b1a:B, 5b1a:O, 5b1b:B, 5b1b:O, 5b3s:B, 5b3s:O, 7coh:B, 7coh:O, 7cp5:B, 7cp5:O, 8d4t:O, 7d5w:B, 7d5w:O, 7d5x:B, 7d5x:O, 7dgq:C1, 7dgr:C4, 7dgs:B9, 7dkf:B3, 2dyr:B, 2dyr:O, 2dys:B, 2dys:O, 2eij:B, 2eij:O, 2eik:B, 2eik:O, 2eil:B, 2eil:O, 2eim:B, 2eim:O, 2ein:B, 2ein:O, 7ev7:B, 7ev7:O, 8gbt:B, 8gbt:O, 8gcq:B, 8gcq:O, 5gpn:z, 5gup:Al, 8gvm:B, 8gvm:O, 8h8r:B, 8h8r:O, 8h8s:B, 8h8s:O, 8ijn:B, 8ijn:O, 5iy5:B, 5iy5:O, 5j4z:BO, 5j7y:BO, 6j8m:B, 6j8m:O, 6juw:B, 6juw:O, 6jy3:B, 6jy4:B, 5luf:y, 6nkn:B, 6nkn:O, 6nmf:B, 6nmf:O, 6nmp:B, 6nmp:O, 7o37:b, 7o3c:b, 7o3e:b, 1occ:B, 1occ:O, 1oco:B, 1oco:O, 1ocr:B, 1ocr:O, 1ocz:B, 1ocz:O, 2occ:B, 2occ:O, 8pw5:o, 8pw5:b, 8pw6:o, 8pw7:o, 7thu:B, 7thu:O, 7tie:B, 7tie:O, 7tih:B, 7tih:O, 7tii:B, 7tii:O, 8ugh:4B, 8ugi:4B, 8ugj:4B, 8ugj:8B, 8ugl:4B, 8ugn:4B, 8ugn:8B, 8ugr:4B, 8ugr:8B, 1v54:B, 1v54:O, 1v55:B, 1v55:O, 7vuw:B, 7vuw:O, 7vvr:B, 7vvr:O, 7w3e:B, 7w3e:O, 5w97:B, 5w97:b, 5wau:B, 5wau:b, 3wg7:B, 3wg7:O, 5x19:B, 5x19:O, 5x1b:B, 5x1b:O, 5x1f:B, 5x1f:O, 3x2q:B, 3x2q:O, 5xdq:B, 5xdq:O, 5xdx:B, 5xdx:O, 7xma:B, 7xma:O, 7xmb:B, 7xmb:O, 5xth:y, 5xti:y, 5xti:By, 7y44:B, 7y44:O, 2y69:B, 2y69:O, 2ybb:M, 7ypy:B, 7ypy:O, 5z84:B, 5z84:O, 5z85:B, 5z85:O, 5z86:B, 5z86:O, 5zco:B, 5zco:O, 5zcp:B, 5zcp:O, 5zcq:B, 5zcq:O, 2zxw:B, 2zxw:O
6 1m56:B 260 252 0.4110 0.3731 0.3849 6.46e-45 6ci0:D, 6ci0:B, 3dtu:D, 3dtu:B, 3fye:B, 3fye:D, 3fyi:B, 3fyi:D, 2gsm:B, 2gsm:D, 1m56:H, 1m57:B, 1m57:H, 3om3:B, 3om3:D, 3oma:B, 3oma:D, 3omi:B, 3omi:D, 3omn:B, 3omn:D, 6pw0:B, 6pw0:D, 6pw1:B, 6pw1:D, 5weh:B, 5weh:H
7 1ar1:B 252 231 0.3559 0.3333 0.3636 3.42e-39 7ate:B, 7atn:B, 7au3:B, 7au6:B, 3ehb:B, 3hb3:B, 1qle:B
8 4w9z:A 138 134 0.2797 0.4783 0.4925 5.43e-38
9 8iuf:C2 196 202 0.2924 0.3520 0.3416 1.49e-30 8iuj:c2, 8iuj:C2
10 2yev:B 319 215 0.2415 0.1787 0.2651 4.68e-20 2yev:E
11 8b6h:DB 604 91 0.1483 0.0579 0.3846 7.29e-19 8b6h:Db, 8bqs:DB, 8bqs:Db, 8gym:c2, 8gym:C2, 8gzu:27, 8gzu:82, 8gzu:c2, 8gzu:C2, 7w5z:C2, 7w5z:c2
12 8b6h:DB 604 128 0.1271 0.0497 0.2344 1.5 8b6h:Db, 8bqs:DB, 8bqs:Db, 8gym:c2, 8gym:C2, 8gzu:27, 8gzu:82, 8gzu:c2, 8gzu:C2, 7w5z:C2, 7w5z:c2
13 7qhm:E 331 248 0.2627 0.1873 0.2500 5.62e-15 7q21:G, 7q21:g, 7qhm:R, 7qho:E, 7qho:R
14 8ovc:Q 286 225 0.2415 0.1993 0.2533 1.57e-14 7e1v:E, 7e1v:Q, 7e1w:E, 7e1w:Q, 7e1x:E, 7e1x:Q, 6hwh:P, 6hwh:L
15 6adq:E 312 245 0.2415 0.1827 0.2327 3.31e-12 6adq:Q, 8ovc:X, 8ovd:Q, 8ovd:X, 7rh5:Q, 7rh5:K, 7rh6:Q, 7rh6:K, 7rh7:Q, 7rh7:K
16 6ptt:A 119 64 0.1102 0.2185 0.4062 7.31e-10 6ptt:B, 6pty:A, 6pty:B
17 6kob:B 256 210 0.1949 0.1797 0.2190 2.21e-09 6kob:F, 6koc:B, 6koc:F, 6koe:B
18 8ajz:B 167 64 0.1017 0.1437 0.3750 1.62e-08 3bvd:B, 2cua:A, 2cua:B, 1ehk:B, 3eh3:B, 3eh4:B, 3eh5:B, 4fa7:B, 4faa:B, 2fwl:B, 4g70:B, 4g71:B, 4g72:B, 4g7q:B, 4g7r:B, 4g7s:B, 4gp4:B, 4gp5:B, 4gp8:B, 8hua:B, 8k65:B, 8k6y:B, 4n4y:B, 5ndc:B, 3qjq:B, 3qjr:B, 3qjs:B, 3qjt:B, 3qju:B, 3qjv:B, 2qpd:B, 2qpe:B, 3s33:B, 3s38:B, 3s39:B, 3s3a:B, 3s3b:B, 3s3c:B, 3s3d:B, 3s8f:B, 3s8g:B, 5u7n:A, 5u7n:B, 5u7n:C, 5u7n:D, 5u7n:E, 5u7n:F, 5u7n:G, 5u7n:H, 1xme:B
19 7deg:B 147 72 0.0975 0.1565 0.3194 9.24e-07 7deg:E
20 3t5p:L 302 141 0.1356 0.1060 0.2270 1.3 3t5p:A, 3t5p:B, 3t5p:C, 3t5p:D, 3t5p:E, 3t5p:G, 3t5p:I, 3t5p:J, 3t5p:K, 4wrr:A, 4wrr:B, 4wrr:C, 4wrr:D
21 6en8:C 191 25 0.0466 0.0576 0.4400 2.0 6el2:A, 6el2:B, 6en8:D, 6en8:F, 6en8:A, 6en8:B, 6en8:E
22 7ppj:A 643 162 0.1653 0.0607 0.2407 4.2 7cux:B, 7cux:C, 7cux:D, 7cux:E, 7cux:F, 7q3z:B, 7q3z:A, 6rr9:A
23 9f8x:A 572 54 0.0551 0.0227 0.2407 7.2 9f8x:B, 9f8x:C, 9f8x:D, 1qni:A, 1qni:B, 1qni:C, 1qni:D, 1qni:E, 1qni:F
24 3mdy:A 320 96 0.1102 0.0813 0.2708 8.1 3mdy:C
25 1peu:A 692 58 0.0720 0.0246 0.2931 9.4 2bq1:E, 2bq1:F, 1peo:A, 1peq:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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