Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DVMWEYKWENTGDAELYGPFTSAQMQTWVSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1l2z:A 62 62 1.0000 1.0000 1.0000 5.50e-43
2 7ruq:A 63 30 0.1613 0.1587 0.3333 0.18 7ruq:C
3 3fma:C 86 30 0.1613 0.1163 0.3333 0.27 3fma:A, 3fma:B, 3fma:D, 3fma:E
4 7rup:A 63 30 0.1452 0.1429 0.3000 1.1
5 2gej:A 361 24 0.1290 0.0222 0.3333 1.5 2gek:A, 4n9w:A
6 6rf0:C 275 33 0.2258 0.0509 0.4242 4.2 8cl7:A, 8cl8:A, 7q36:A, 6rex:A, 6rex:B, 6rex:C, 6rex:D, 6rex:E, 6rez:A, 6rez:B, 6rez:C, 6rez:D, 6rez:E, 6rf0:A, 6rf0:E, 6rf0:B, 6rf0:D, 6rf1:A, 6rf1:E, 6rf1:B, 6rf1:C, 6rf1:D, 6rf3:A, 6rf3:B, 6rf3:C, 6rf3:D, 6rf3:E, 6rf4:A, 6rf4:B, 6rf4:C, 6rf4:D, 6rf4:E, 6rf5:A, 6rf6:A, 6rf7:A, 6rf9:A, 6rfa:A, 6rfb:A, 6rfc:A, 6tk1:A, 6tk2:A, 6tk3:A, 6tk4:A, 6tk5:A, 6tk6:A, 6tk7:A, 3x3b:A, 3x3c:A, 4xtl:A, 4xtn:A, 4xtn:B, 4xtn:C, 4xtn:D, 4xtn:E, 4xtn:F, 4xtn:G, 4xtn:H, 4xtn:I, 4xtn:J, 4xto:A, 4xto:B, 4xto:C, 4xto:D, 4xto:E, 6xyt:A, 6xyt:B, 6xyt:C, 6xyt:D, 6xyt:E, 6yby:A, 6ybz:A, 6ybz:B, 6ybz:C, 6ybz:D, 6ybz:E, 6yc0:A, 6yc0:B, 6yc0:C, 6yc0:D, 6yc0:E, 6yc1:A, 6yc1:B, 6yc1:C, 6yc1:D, 6yc1:E, 6yc2:A, 6yc2:B, 6yc2:C, 6yc2:D, 6yc2:E, 6yc3:A, 6yc3:B, 6yc3:C, 6yc3:D, 6yc3:E, 6yc4:A, 6yc4:B, 6yc4:C, 6yc4:D, 6yc4:E, 6yt4:A, 6yt4:B, 6yt4:D, 6yt4:E, 6yt4:C
7 4yn2:A 281 19 0.1613 0.0356 0.5263 7.5
8 3exs:D 218 18 0.1452 0.0413 0.5000 8.4 3exs:A, 3ext:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218