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BioLiP
>protein
DVITVYKDCNYTGFSGGLTIGDYNLARLNSLGVLNDDISSLRITQGYQAILYQDDNFGGASTVINSDNSCLNTTWNDKVS
SIRVIAN

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3hzb:D 90 87 1.0000 0.9667 1.0000 8.44e-58 3hzb:A, 3hzb:B, 3hzb:C, 3hzb:E, 3hzb:F, 3hzb:G, 3hzb:H
2 3so1:H 89 85 0.3563 0.3483 0.3647 1.62e-15 5ht8:A, 3i9h:A, 3i9h:B, 3i9h:C, 3i9h:D, 3i9h:E, 3i9h:F, 3i9h:G, 3i9h:H, 3iaj:A, 3sny:A, 3snz:A, 3so0:A, 3so0:B, 3so0:C, 3so0:D, 3so0:E, 3so0:F, 3so0:G, 3so1:A, 3so1:B, 3so1:C, 3so1:D, 3so1:E, 3so1:F, 3so1:G
3 1prr:A 173 84 0.3793 0.1908 0.3929 2.12e-12 1nps:A, 1prs:A
4 1prr:A 173 79 0.3333 0.1676 0.3671 1.02e-07 1nps:A, 1prs:A
5 1hdf:A 100 85 0.2759 0.2400 0.2824 0.006 1hdf:B
6 2k1w:A 85 37 0.1839 0.1882 0.4324 0.017 5ht9:A, 5ht9:B, 3hz2:A, 3hz2:B, 3hz2:C, 3hz2:D
7 4dzh:A 439 29 0.1379 0.0273 0.4138 2.2
8 1hl7:A 279 21 0.1149 0.0358 0.4762 4.8 1hl7:B
9 3ci0:K 280 17 0.1149 0.0357 0.5882 6.4
10 2bv2:A 83 38 0.1839 0.1928 0.4211 6.8 2bv2:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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