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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DVIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGD
ALVNIGDYVSASTTELVRVTNLNPIYADGSHHHHHH

The query sequence (length=116) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2k33:A 116 116 1.0000 1.0000 1.0000 2.29e-82
2 1t5e:C 231 134 0.3621 0.1818 0.3134 8.30e-11 1t5e:E, 1t5e:F, 1t5e:G, 1t5e:H, 1t5e:I, 1t5e:K, 1t5e:L
3 5vyz:C 1083 86 0.2241 0.0240 0.3023 0.046 5vyw:A, 5vyw:B, 5vyw:C, 5vz0:C
4 5vyz:A 1144 86 0.2241 0.0227 0.3023 0.050 5vyw:D, 5vyz:B, 5vyz:D, 5vz0:A, 5vz0:B, 5vz0:D, 7zyy:A, 7zyy:C, 7zyy:B, 7zyy:D, 7zyz:A, 7zz0:A, 7zz1:A, 7zz2:A, 7zz3:A, 7zz3:C, 7zz3:B, 7zz3:D, 7zz4:A, 7zz5:A, 7zz6:D, 7zz6:A, 7zz8:A, 7zz8:C, 7zz8:D, 7zz8:B
5 3o8o:B 763 49 0.1379 0.0210 0.3265 0.21 3o8o:D, 3o8o:F, 3o8o:H
6 4qsh:C 1081 85 0.1897 0.0204 0.2588 0.40 4qsh:A, 4qsh:D, 4qsh:B, 4qsk:A, 4qsk:B
7 1ycd:B 238 50 0.1552 0.0756 0.3600 0.89 1ycd:A
8 4hnv:B 1033 24 0.1034 0.0116 0.5000 1.5 8gk8:D
9 3bg5:A 1137 24 0.1034 0.0106 0.5000 1.6 3bg5:C, 8gk8:A, 8gk8:B, 3hb9:A, 3hb9:C, 3hbl:A, 3hbl:C, 4hnt:A, 4hnt:C, 4hnu:A, 4hnu:C, 4hnv:A, 4hnv:C
10 3bg5:B 1074 24 0.1034 0.0112 0.5000 1.7 3bg5:D, 8gk8:C, 3hb9:B, 3hb9:D, 3hbl:B, 3hbl:D, 4hnt:B, 4hnt:D, 4hnu:B, 4hnu:D, 4hnv:D, 3ho8:A, 3ho8:C, 3ho8:B
11 3mj9:A 229 36 0.1207 0.0611 0.3889 4.0
12 6knb:B 1120 19 0.0948 0.0098 0.5789 4.0 6knc:B
13 8jxn:J 541 25 0.0948 0.0203 0.4400 5.1
14 1xr0:B 129 57 0.1121 0.1008 0.2281 6.6 2mfq:A
15 6yxx:E3 403 24 0.0776 0.0223 0.3750 9.6
16 8j78:I 651 25 0.0948 0.0169 0.4400 9.7 8j78:C, 8j7d:D, 8j7d:F, 8j7d:I, 8j7d:L, 8jaw:A, 8jaw:C, 8jaw:E, 8jaw:F, 8jaw:H, 8jaw:K, 8k2v:A, 8k2v:B, 8k2v:C, 8k2v:D, 8k2v:E, 8k2v:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218