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BioLiP
>protein
DVHIAEMSVLKKSSTMPADSTIIKGYDFNEGINYDALLDQYMSTGFQASHFAQAVQQINTMLTIREEQFEGDHTLPYPEG
KQKRACTIFLGYTSNLVTSGVRENIRYLVEHDLVDCIVTSAGGVEEDLIKCLAPSYLGAFDLDGKTLRHNGLNRAGNIII
PNNNYCQFEDWLMPILDSCELEQKNNDFSWTPSKLIDRLGAEINDKRSICYWAHRNRIPVFSPALTDGSIGDMLYFHSFR
NGGIKLDIVEDLRHINTMAVRSNRTGVILLGGGVMKHHINNANLMRNGSDYAVYVNTGQEFDGSDSGARPDEAVSWGKVR
SDCRPVKIYADATLVFPLLVAKTFARHVQQKH

The query sequence (length=352) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6w3z:C 352 352 1.0000 1.0000 1.0000 0.0 6w3z:A, 6w3z:D, 6w3z:B
2 8a0e:A 356 347 0.6307 0.6236 0.6398 3.03e-173 8a0e:B, 8a0e:C, 8a0e:D, 8a0f:A, 8a0f:B, 8a0g:A, 8a0g:B, 7a6t:A, 7a6t:B, 1dhs:A, 6p4v:A, 6p4v:B, 6pgr:A, 6pgr:B, 1rlz:A, 1roz:A, 1roz:B, 1rqd:A, 1rqd:B, 6xxi:A, 6xxi:B, 6xxj:A, 6xxj:B, 6xxk:A, 6xxk:B, 6xxl:A, 6xxl:B, 6xxm:A, 6xxm:B
3 8qzw:A 359 340 0.5398 0.5292 0.5588 7.73e-139 8qzx:A, 8qzx:B, 8qzx:C, 8qzx:D
4 6wkz:B 296 332 0.5398 0.6419 0.5723 3.25e-138 6wkz:A, 6wl6:A, 6wl6:B
5 7cmc:A 312 326 0.3722 0.4199 0.4018 3.44e-79 7cmc:D
6 6dft:F 321 320 0.3295 0.3614 0.3625 3.00e-65 6dft:B, 6dft:D, 6dft:H, 6dft:J, 6dft:L
7 6dft:A 384 378 0.3722 0.3411 0.3466 4.43e-61 6dft:C, 6dft:E, 6dft:G, 6dft:I, 6dft:K
8 8put:A 312 267 0.2699 0.3045 0.3558 5.66e-51 8put:B, 8put:C, 8put:D
9 3ahm:A 564 110 0.0795 0.0496 0.2545 1.4 3ahm:B, 3ahn:A, 3ahn:B, 3aho:A, 3aho:B
10 7ooc:R 84 24 0.0284 0.1190 0.4167 2.8 7p6z:R, 7pah:R, 7pai:R, 7paj:R, 7pak:R, 7pal:R, 7pam:R, 7pan:R, 7pao:R, 7paq:R, 7par:R, 7pas:R, 7ph9:R, 7pha:R, 7phb:R, 7phc:R, 7pi8:R, 7pi9:R, 7pia:R, 7pib:R, 7pic:R, 7pio:R, 7pip:R, 7piq:R, 7pir:R, 7pis:R, 7pit:R
11 1zde:A 160 72 0.0511 0.1125 0.2500 4.9
12 8q1b:A 443 72 0.0511 0.0406 0.2500 9.4 8q1b:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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