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BioLiP
>protein
DVFVLDTSVFTNPEIYRTFEEDQRGAMETFIHLALNSRAEFYMPTSVYTEMRKIMDVGELWAEFEMVVKIRSPRRFQLTV
PADFLYEFIEELRYRINKGLRIAEEHTREASGSEDVGKLIARLREKYREALRQGILDSKEDVDVLLLAYELDGVLVSADE
GLRTWADKIGIKLIDPKNFKNILESLVRH

The query sequence (length=189) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8kd9:C 189 189 1.0000 1.0000 1.0000 2.89e-138 8kd9:E, 8kd9:G, 8kd9:H, 8kd9:D, 8kd9:F, 8kd9:J, 8kd9:I, 8kd9:A
2 8kda:E 189 188 0.6825 0.6825 0.6862 4.94e-93 8kda:G, 8kda:H, 8kda:F, 8kda:C, 8kda:D, 8kda:I, 8kda:J, 8kda:K, 8kda:A
3 7e8o:A 194 187 0.4233 0.4124 0.4278 6.38e-54 7e8o:B, 7e8o:C, 7e8o:D
4 2bv3:A 632 171 0.2381 0.0712 0.2632 0.045 1dar:A
5 2lcq:A 161 35 0.0794 0.0932 0.4286 0.36
6 3f8h:A 137 74 0.0899 0.1241 0.2297 0.71
7 7mq8:SB 440 53 0.0952 0.0409 0.3396 3.5 7mq9:SB, 7mqa:SB
8 7q3g:A 517 94 0.1217 0.0445 0.2447 3.6 7q3g:E, 7q3g:D, 7q3g:C, 7q3g:B
9 6rxt:UL 785 70 0.0952 0.0229 0.2571 5.4 6rxu:UL, 6rxv:UL, 6rxx:UL, 6rxy:UL, 6rxz:UL
10 8i54:A 1113 65 0.1005 0.0171 0.2923 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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