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BioLiP
>protein
DVDPFYYDYETVRNGGLIFAALAFIVGLIIILSKR

The query sequence (length=35) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8jbk:G 36 34 0.9714 0.9444 1.0000 1.76e-18 7d91:G, 7d93:E, 7d93:G, 7d94:G, 7d94:E, 7ddf:G, 7ddf:E, 7ddh:G, 7ddh:E, 7ddi:G, 7ddi:E, 7ddk:E, 7ddl:G, 7ddl:E, 4hyt:G, 4hyt:E, 8jbk:E, 8jbl:G, 8jbl:E, 8jbm:G, 8jbm:E, 7qtv:G, 7qtv:E, 4res:G, 4res:E, 4ret:G, 4ret:E, 3wgu:G, 3wgu:E, 3wgv:G, 3wgv:E, 7wys:G, 7wys:E, 7wyt:G, 7wyt:E, 4xe5:G
2 7e20:C 33 33 0.8286 0.8788 0.8788 3.79e-16 7e1z:C, 7e21:C
3 8jfz:E 40 33 0.4000 0.3500 0.4242 0.010 8jfz:G, 7wyu:G, 7wyu:E, 7wyz:G, 7wyz:E
4 3aou:A 156 22 0.2857 0.0641 0.4545 3.6 3aou:B, 3aou:C, 3aou:D, 3aou:E, 3aou:F, 3aou:G, 3aou:H, 3aou:I, 3aou:J, 2bl2:A, 2bl2:B, 2bl2:C, 2bl2:D, 2bl2:E, 2bl2:F, 2bl2:G, 2bl2:H, 2bl2:I, 2bl2:J, 2db4:A, 2db4:B, 2db4:C, 2db4:D, 2db4:E, 2db4:F, 2db4:G, 2db4:H, 2db4:I, 2db4:J
5 6v4x:J 311 22 0.2857 0.0322 0.4545 7.3
6 2ism:B 333 15 0.2286 0.0240 0.5333 7.8 2ism:A
7 7sa3:B 450 23 0.2286 0.0178 0.3478 8.1
8 8eqm:B 483 23 0.2286 0.0166 0.3478 8.7 8eqm:b

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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