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BioLiP
>protein
DVDIETLKQELLELKQRYEAQQKALAVLEQRVRQVED

The query sequence (length=37) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6fue:A 38 37 1.0000 0.9737 1.0000 1.58e-18 6fue:E, 6fue:F
2 6b8h:b 200 35 0.4595 0.0850 0.4857 1.0 6b8h:q
3 3ukm:A 252 30 0.2973 0.0437 0.3667 3.0 3ukm:B, 3ukm:C, 3ukm:D
4 6n8z:B 723 17 0.2703 0.0138 0.5882 4.3 6ahf:F, 5kne:A, 5kne:B, 6n8t:C, 6n8t:D, 6n8t:E, 6n8v:A, 6n8v:B, 6n8v:C, 6n8v:E, 6n8v:F, 6n8z:A, 6n8z:C, 6n8z:D, 6n8z:E, 6n8z:F, 5vjh:A, 5vjh:B, 5vjh:C, 5vjh:D, 5vjh:E, 5vjh:F, 5vy8:A, 5vy8:B, 5vy8:F, 5vy9:C, 5vy9:D, 5vya:A, 5vya:B, 5vya:C, 5vya:D, 5vya:E, 5vya:F
5 1f0x:A 502 23 0.2973 0.0219 0.4783 4.7 1f0x:B
6 6jni:A 145 24 0.2703 0.0690 0.4167 5.6 6jgw:B, 6jgw:A, 6jgx:A, 6jgx:B, 6jni:B, 6jni:H, 6jni:C, 6jni:D, 6jni:E, 6jni:F, 6jni:G, 6jyw:A, 6jyw:B
7 8pts:A 195 36 0.3784 0.0718 0.3889 6.0 8pts:B
8 7pny:a 211 29 0.2703 0.0474 0.3448 6.7 8csr:6, 8css:6, 8cst:6, 8csu:6, 7pnx:a, 7pnz:a
9 7slp:B 321 31 0.3243 0.0374 0.3871 8.2 6d12:A, 6d12:B, 7slq:B, 4wkr:A, 4wkr:B
10 5x1n:A 460 27 0.3514 0.0283 0.4815 9.3 5x1j:A, 5x1j:B, 5x1j:C, 5x1k:A, 5x1k:B, 5x1k:C, 5x1l:B, 5x1l:C, 5x1m:B, 5x1m:C, 5x1n:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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