Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DVCEAAGKAIYIVSDGTGWTAEHSVNAALGQFENCLADRGCAVNTHLFSLIDDMDRLIEVIKQAAKEGALVLYTLADPSM
AEATKKACDFWGVPCTDVLRPTVEAIASHIGVAPSGIPRSSPSRNGRLSEDYFQRIDAIDFTIKQDDGALPQNLYRADIV
LAGVSRTGKTPLSIYLAQKGYKVANVPIVMGVDLPKSLFEINQDKVFGLTINPAIEMDHVRQELVHANQIFAQNPSWPVI
AVTGKAIEETAAVILGILHDRKQKCSMPRISKRY

The query sequence (length=274) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5d0n:A 274 274 1.0000 1.0000 1.0000 0.0 5d1f:A
2 2oas:A 427 100 0.1131 0.0726 0.3100 2.7 2oas:B
3 3kta:B 171 46 0.0584 0.0936 0.3478 2.8
4 5msr:B 520 169 0.1606 0.0846 0.2604 4.1 5msp:A, 5msr:A, 5msr:C, 5msr:D, 5msv:A, 5msv:B, 5msv:C, 5msv:D
5 6o8m:A 95 51 0.0584 0.1684 0.3137 4.2
6 4xcq:A 303 38 0.0547 0.0495 0.3947 5.8
7 3f11:A 316 68 0.0766 0.0665 0.3088 6.0 2pt2:A
8 3wnb:A 361 33 0.0365 0.0277 0.3030 6.5 3wnc:A
9 2cxx:A 184 96 0.1022 0.1522 0.2917 7.5 2cxx:B, 2cxx:C
10 6kwt:A 338 61 0.0657 0.0533 0.2951 9.5
11 1dnp:A 469 47 0.0511 0.0299 0.2979 9.7 1dnp:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218