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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRH
DAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFI
IHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLSKQAPALPKGDPR
PVLIAALQFLGQQAEAHWQDFSVEQILQSAVKNWRLTAVPESAIVNSTFS

The query sequence (length=290) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4a91:A 290 290 1.0000 1.0000 1.0000 0.0 1nzj:A
2 4g6z:A 380 237 0.3103 0.2368 0.3797 4.00e-40
3 8i9i:A 468 301 0.3552 0.2201 0.3422 6.64e-40 8i9i:B
4 2cfo:A 484 276 0.3517 0.2107 0.3696 1.41e-38
5 2cuz:A 468 248 0.3103 0.1923 0.3629 7.87e-37 2cv0:A, 2cv0:B, 2cv1:A, 2cv1:B, 2cv2:A, 2cv2:B, 2dxi:A, 2dxi:B, 1g59:A, 1g59:C, 1j09:A, 1n75:A, 1n77:A, 1n77:B, 1n78:A, 1n78:B
6 4gri:B 485 250 0.3034 0.1814 0.3520 1.06e-36 4gri:A
7 3al0:C 564 278 0.3172 0.1631 0.3309 1.36e-34 3afh:A, 3akz:B, 3akz:D, 3akz:C, 3akz:A
8 8vc5:A 488 253 0.2897 0.1721 0.3320 1.32e-29 8vc5:B
9 6brl:A 502 258 0.2517 0.1454 0.2829 2.96e-25
10 3aii:A 455 231 0.2586 0.1648 0.3247 2.94e-23
11 4h3s:A 585 107 0.1103 0.0547 0.2991 6.89e-08
12 4jyz:A 542 105 0.1069 0.0572 0.2952 1.05e-07 1euq:A, 1euy:A, 1exd:A, 1gtr:A, 1gts:A, 4jxx:A, 4jxz:A, 1o0b:A, 1o0c:A, 1qrs:A, 1qrt:A, 1qru:A, 1qtq:A, 2rd2:A, 2re8:A, 1zjw:A
13 7wao:A 502 66 0.0793 0.0458 0.3485 2.86e-06 7waj:A, 7wak:A, 7wal:A
14 8uk6:A 573 107 0.0931 0.0471 0.2523 5.87e-04
15 5zdk:A 543 95 0.0793 0.0424 0.2421 1.2 5zdl:A
16 5kok:A 348 114 0.0897 0.0747 0.2281 2.2 5koc:A, 5koc:B, 5kok:B, 5kpc:A, 5kpc:B, 5kpg:A, 5kpg:B
17 2obb:A 121 51 0.0586 0.1405 0.3333 2.9
18 4qqw:A 911 147 0.1379 0.0439 0.2721 3.6 4qqw:C, 4qqw:E, 4qqw:G, 4qqx:A, 4qqx:C, 4qqx:E, 4qqy:A, 4qqy:C, 4qqy:E, 4qqy:G, 4qqz:A, 4qqz:C, 4qqz:E, 4qqz:G
19 4qqx:G 887 147 0.1379 0.0451 0.2721 4.1
20 4nen:A 1063 60 0.0586 0.0160 0.2833 5.1
21 5iov:B 798 55 0.0552 0.0201 0.2909 7.7 5iou:B, 5iou:D, 5iov:D, 5un1:D, 5un1:H
22 3e5r:O 336 39 0.0414 0.0357 0.3077 8.2 3e5r:A, 3e5r:B, 3e5r:C, 3v1y:O, 3v1y:A, 3v1y:B, 3v1y:C
23 4tll:D 757 55 0.0552 0.0211 0.2909 8.9 4tll:B, 4tlm:B, 5un1:B
24 4tlm:D 753 55 0.0552 0.0212 0.2909 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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