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BioLiP
>protein
DTPENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENKEYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNSD
LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRLFQTRLTET

The query sequence (length=149) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4a1g:B 149 149 1.0000 1.0000 1.0000 6.27e-111 4a1g:A, 4a1g:C, 4a1g:D
2 3si5:A 152 142 0.3691 0.3618 0.3873 1.32e-32 3si5:B
3 7y7b:e 168 54 0.1141 0.1012 0.3148 0.18
4 6an0:A 433 62 0.1275 0.0439 0.3065 0.82
5 8wm6:a 175 63 0.1275 0.1086 0.3016 2.1 8wmj:a, 8wmv:a, 8wmw:a
6 8wm6:e 169 54 0.1074 0.0947 0.2963 2.3 8wmv:e, 8wmw:e
7 6kfu:A 527 47 0.0738 0.0209 0.2340 2.8 6kfm:A, 6kfm:B, 6kfr:A, 6kfr:B
8 3bo5:A 269 32 0.0671 0.0372 0.3125 6.9
9 5aza:A 836 68 0.1275 0.0227 0.2794 7.8 5b3z:A, 5b3z:B, 5b3z:C, 5b3z:D, 2zag:A, 2zag:B, 2zag:C, 2zag:D, 2zai:A, 2zai:B, 2zai:C, 2zai:D
10 5x03:B 365 26 0.0671 0.0274 0.3846 8.3 5t4j:B, 5t4k:A, 6uxz:B, 6uxz:C, 5x03:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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