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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DTLKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGRSSGSEWD
KTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKGCLSNKGFVYTKIKKNDRFVHVIGTHLQAESPASVRTNQLKEIQDF
IKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGHTATWDATTNSIAKYNFPDSPAEYLDYIIAS
KDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDYSDHYPVEATISM

The query sequence (length=287) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2dds:A 299 298 1.0000 0.9599 0.9631 0.0 2ddr:A, 2ddr:B, 2ddr:C, 2ddr:D, 2dds:B, 2dds:C, 2dds:D, 2ddt:A, 2ddt:B
2 3i46:A 289 292 0.5889 0.5848 0.5788 1.88e-110 3i46:B
3 3adr:A 259 61 0.0732 0.0811 0.3443 0.19 3adr:B
4 6fv3:D 350 85 0.0732 0.0600 0.2471 0.53
5 6fv4:B 385 85 0.0732 0.0545 0.2471 0.55 6fv3:A, 6fv3:B, 6fv3:C, 6fv4:A
6 8q7x:A 1914 69 0.0767 0.0115 0.3188 1.8
7 8qp8:A 1918 69 0.0767 0.0115 0.3188 1.8
8 6z8k:A 2158 94 0.0871 0.0116 0.2660 2.4 5amq:A, 7orn:A
9 7orm:A 2145 94 0.0871 0.0117 0.2660 2.5
10 6z6g:A 2142 94 0.0871 0.0117 0.2660 2.6 5amr:A
11 6z6b:PPP 2036 94 0.0871 0.0123 0.2660 2.6 6z6b:EEE
12 7oro:A 2008 94 0.0871 0.0125 0.2660 2.8 7ori:A
13 6kz8:A 784 121 0.1010 0.0370 0.2397 4.2 6kz8:B, 6kz9:A
14 6dzi:O 118 78 0.0871 0.2119 0.3205 4.4 6dzp:O, 7f0d:N, 8fr8:J, 8kab:O, 7kgb:N, 7msc:N, 7msh:N, 7msm:N, 7msz:N, 7mt2:N, 7mt3:N, 7mt7:N, 5o60:O, 5o61:O, 7s0s:P, 7sfr:N, 5v7q:N, 5v93:N, 8v9j:P, 8v9k:P, 8v9l:P, 8whx:Q, 8why:Q, 8wi7:Q, 8wi8:Q, 8wib:Q, 8wic:Q, 7xam:O, 5xym:N, 8xz3:O, 7y41:O, 5zeb:O, 5zep:O, 5zet:O
15 4h7u:A 577 67 0.0662 0.0329 0.2836 7.8
16 8u2o:A 289 71 0.0906 0.0900 0.3662 9.5 9cmz:A, 9cmz:B, 9cmz:C, 8u2o:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218