Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DTFSRTGPLMEAASYPAWTQQLIQDCSESKRRVVEHELYQRMRDNKLSAKVMRQYLIGGWPVVEQFALYMAQNLTKTRFA
RHPGEDMARRWLMRNIRVELNHADYWVHWSRAHGVTLEDLQAQQVPPELHALSHWCWHTSSADSLIVAIAATNYAIEGAT
GEWSALVCSNGIYAAAFPEEDRKRAMKWLKMHADAHPWEALEIIVTLAGLNPTKALQAELRQAICKSYDYMYLFLERCMQ
QEKTAVTRERLA

The query sequence (length=252) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4wwj:A 256 255 1.0000 0.9844 0.9882 0.0 6p5q:A, 6p5q:B, 4wwj:B, 4wwz:A, 4wwz:B, 4wx0:A, 4wx0:B
2 3bkj:H 224 82 0.0913 0.1027 0.2805 0.008 3bae:H
3 1rcw:B 214 131 0.1310 0.1542 0.2519 0.017 1rcw:A, 1rcw:C
4 7bxv:H 217 115 0.1190 0.1382 0.2609 0.067
5 1eap:B 216 94 0.0952 0.1111 0.2553 0.41
6 8ffi:A 419 92 0.0952 0.0573 0.2609 2.2 8ffi:E, 8ffi:I, 8ffi:M, 8i87:G, 8i87:O, 8i87:A, 8i87:C, 8j7s:B, 8j7s:F, 8j7s:J, 8j7s:N, 8jr8:B, 8jr8:D, 8oz6:A, 8oz6:C, 8oz6:E, 8oz6:G, 8ozd:A, 8ozd:C, 8oze:E, 8oze:G, 8ozf:A, 8ozf:C, 8ozf:F, 8ozf:H, 8ozg:A, 8ozg:C, 8ozg:F, 8ozg:H, 8ozi:A, 8ozi:C, 8ozi:E, 8ozi:G, 8sp0:A, 8sp0:E, 8sp3:A, 8sp3:E, 8spo:A
7 7u8c:H 214 94 0.0913 0.1075 0.2447 2.5
8 4bkl:A 216 63 0.0675 0.0787 0.2698 2.6
9 6xj3:A 241 92 0.0913 0.0954 0.2500 4.4 6xj3:B, 6xj3:C, 6xj3:D
10 2hrp:H 226 97 0.0913 0.1018 0.2371 5.3 2hrp:N
11 8spo:I 371 32 0.0476 0.0323 0.3750 5.3
12 1etz:H 228 91 0.0873 0.0965 0.2418 5.5 1etz:B
13 8spo:M 394 32 0.0476 0.0305 0.3750 6.3 8spo:E
14 8bc0:B 636 31 0.0516 0.0204 0.4194 7.1 6p48:A, 6p48:B, 6p49:A, 6p49:B, 6qpc:A, 6qpc:B
15 3wem:A 830 41 0.0556 0.0169 0.3415 7.9 3w37:A, 3wel:A, 3wen:A, 3weo:A
16 3zf8:A 288 39 0.0437 0.0382 0.2821 8.8

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218