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BioLiP
>protein
DTDTADQVMASFKILAGDKNYITMDELRRELPPDQAEYCIARMAPYTGPDSVPGALDYMSFSTALYGESDL

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2n8y:A 153 71 1.0000 0.4641 1.0000 6.91e-48 6c0a:A
2 1h8b:A 73 71 0.7606 0.7397 0.7606 1.07e-35 7b56:A, 6ts3:A, 6ts3:B
3 2kn2:A 92 29 0.1690 0.1304 0.4138 1.4
4 4hrg:A 114 29 0.1690 0.1053 0.4138 1.7 1bt6:A, 1bt6:B, 4drw:A, 4drw:B, 4drw:C, 4drw:D, 4ftg:A, 4ftg:B, 4hre:E, 4hre:F, 4hre:I, 4hre:J, 4hrg:B, 4hrh:A, 4hrh:B
5 2l1w:A 149 30 0.1690 0.0805 0.4000 2.2 2ksz:A, 2roa:A, 2rob:A
6 5x7o:A 1247 38 0.1972 0.0112 0.3684 2.6 5x7o:B, 5x7p:B, 5x7p:A, 5x7q:A, 5x7q:B, 5x7r:A, 5x7r:B, 5x7s:A, 5x7s:B
7 5esz:A 212 50 0.2535 0.0849 0.3600 3.1
8 5mkf:A 481 26 0.1268 0.0187 0.3462 7.1 8hk7:A, 8hk7:B, 8hk7:C, 8hk7:D, 5mke:A, 5mke:B, 5mke:C, 5mke:D, 5mkf:B, 5mkf:C, 5mkf:D, 6t9n:A, 6t9n:B, 6t9n:C, 6t9n:D, 6t9o:A, 6t9o:B, 6t9o:C, 6t9o:D
9 8t7c:A 1001 59 0.1972 0.0140 0.2373 8.2
10 1h7q:A 240 18 0.1408 0.0417 0.5556 8.6 1h7l:A, 1qgq:A, 1qgs:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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