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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTF
PQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK
LGMDYDGRPNCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFR

The query sequence (length=225) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1zbu:B 304 225 0.9956 0.7368 0.9956 1.62e-171 4l8r:B, 4l8r:E, 4qoz:B, 4qoz:E, 1w0h:A, 1zbh:A, 1zbh:D, 1zbh:B, 1zbh:C, 1zbu:A, 1zbu:C, 1zbu:D
2 7n8w:A 214 212 0.3289 0.3458 0.3491 4.40e-39 7n8w:B
3 2xri:A 206 188 0.3378 0.3689 0.4043 1.70e-37 7k05:A, 7k05:B, 7k06:A, 7k06:B, 7k07:A, 7k07:B, 7lpy:A, 7lpy:B, 7lpz:A, 7lpz:B, 7lq0:A, 7lq0:B
4 3cg7:A 296 202 0.2711 0.2061 0.3020 1.37e-21 3cg7:B, 3cm5:A, 3cm5:B, 3cm6:A, 3cm6:B, 5dk5:A, 5dk5:B
5 6cxh:A 382 74 0.0933 0.0550 0.2838 0.36 7s4l:A, 7s4l:D, 7s4l:E
6 5nly:B 351 71 0.0933 0.0598 0.2958 0.63 6fne:A
7 6ciz:C 477 73 0.0844 0.0398 0.2603 4.5 6chi:A, 6chi:B, 6chi:C, 6chi:D, 6cir:A, 6cir:B, 6cir:C, 6cir:D, 6ciz:A, 6ciz:B, 6ciz:D, 8fda:A, 8fda:B, 8fda:C, 8fda:D, 5irq:A, 5irq:B, 5irq:C, 5irq:D, 5irv:A, 5irv:B, 5irv:C, 5irv:D, 4nkv:A, 4nkv:B, 4nkv:C, 4nkv:D, 4nkw:A, 4nkw:B, 4nkw:C, 4nkw:D, 4nkx:A, 4nkx:B, 4nkx:C, 4nkx:D, 4nky:A, 4nky:B, 4nky:C, 4nky:D, 4nkz:A, 4nkz:B, 4nkz:C, 4nkz:D, 3ruk:A, 3ruk:B, 3ruk:C, 3ruk:D, 3swz:A, 3swz:B, 3swz:C, 3swz:D, 5uys:A, 5uys:B, 5uys:C, 5uys:D, 6wr0:A, 6wr0:B, 6wr0:C, 6wr0:D, 6wr1:A, 6wr1:B, 6ww0:A, 6ww0:B, 6ww0:C, 6ww0:D
8 8cmk:A 913 170 0.1911 0.0471 0.2529 5.7 8cmk:B, 6gx9:A, 6gx9:B
9 3c46:A 1095 65 0.0889 0.0183 0.3077 7.4 3c2p:A, 3c2p:B, 3c3l:A, 3c3l:B, 3c46:B, 4ff1:A, 4ff1:B, 4ff2:A, 4ff2:B, 4ff3:A, 4ff3:B, 4ff4:A, 4ff4:B, 3q0a:A, 3q0a:B, 3q22:A, 3q22:B, 3q23:A, 3q23:B, 3q24:A, 3q24:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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