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BioLiP
>protein
DSYTHLSFYEKRELFRKKLREIEGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNAQSGCNCSSLGGCDLNNPS
RCECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSACSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFI
TCYLGEVITSAEAAKRDKNDDGITYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGARTIYDLAFF
AIKDIQPLEELTFDYAGAKDFSPVQLRRQCKCGSANCRGWLFG

The query sequence (length=283) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6z2a:A 283 283 1.0000 1.0000 1.0000 0.0 6box:A, 6box:B, 6bp4:B, 6bp4:A, 1mvh:A, 1mvx:A, 6z2a:B
2 1peg:A 266 281 0.3887 0.4135 0.3915 9.66e-55 1ml9:A, 1peg:B
3 2r3a:A 270 256 0.3498 0.3667 0.3867 4.31e-48 6p0r:A, 6p0r:B
4 7x73:A 274 267 0.3534 0.3650 0.3745 3.17e-45 7btv:A, 7btv:B, 7buc:A, 7buc:B, 7dcf:A, 7dcf:B, 5jhn:A, 5jhn:B, 5jin:A, 5jin:B, 5jiy:A, 5jiy:B, 5jj0:A, 5jj0:B, 3k5k:A, 3k5k:B, 4nvq:A, 4nvq:B, 2o8j:A, 2o8j:B, 2o8j:C, 2o8j:D, 3rjw:A, 3rjw:B, 5t0k:A, 5t0k:B, 5t0m:A, 5t0m:B, 7t7l:A, 7t7l:B, 7t7l:C, 7t7l:D, 5ttf:A, 5ttf:B, 5ttf:C, 5ttf:D, 5tuy:A, 5tuy:B, 5v9i:A, 5v9i:B, 5v9i:C, 5v9i:D, 5vsc:A, 5vsc:B, 5vse:A, 5vse:B, 7x73:B, 7xua:A, 7xua:B, 7xub:A, 7xub:B, 7xuc:A, 7xuc:B, 7xud:A, 7xud:B
5 3hna:A 280 272 0.3534 0.3571 0.3676 4.77e-44 3fpd:A, 3fpd:B, 3hna:B, 4i51:A, 4i51:B, 2igq:A, 2igq:B, 6mbo:A, 6mbo:B, 6mbp:A, 6mbp:B, 3mo0:A, 3mo0:B, 3mo2:A, 3mo2:B, 3mo2:C, 3mo2:D, 3mo5:A, 3mo5:B, 3mo5:C, 3mo5:D, 2rfi:A, 2rfi:B, 3sw9:A, 3sw9:B, 3swc:A, 3swc:B, 7t7m:A, 7t7m:B, 7t7m:C, 7t7m:D, 5ttg:A, 5ttg:B, 5tuz:A, 5tuz:B, 5v9j:A, 5v9j:B, 5vsd:A, 5vsd:B, 5vsf:A, 5vsf:B, 8xpt:A, 8xpt:B, 8xpt:C, 8xpt:D
6 6a5m:A 488 289 0.3710 0.2152 0.3633 7.52e-42 6a5k:A
7 6a5n:A 502 276 0.3498 0.1972 0.3587 4.95e-38
8 3bo5:A 269 213 0.2544 0.2677 0.3380 1.83e-35
9 4qen:A 472 266 0.2968 0.1780 0.3158 1.93e-34 4qeo:A, 4qep:A
10 5jlb:A 248 178 0.2297 0.2621 0.3652 1.22e-25 7ea8:L, 4fmu:A, 4h12:A, 6j9j:A, 5jjy:A, 5jle:A, 5lss:A, 5lsx:A, 5lsy:A, 5lsz:A, 5lt6:A, 5lt6:B, 5lt7:A, 5lt8:A, 7lzb:A, 7lzd:A, 7lzf:A, 8q5p:A, 7ty2:A, 7ty3:A, 5v21:A, 5v22:A, 6vdb:A
11 4nj5:A 482 256 0.2580 0.1515 0.2852 8.37e-25
12 6ine:A 247 176 0.2085 0.2389 0.3352 2.76e-22 6ago:A, 6ago:B, 3ope:A, 3ope:B, 6wzw:A, 6x0p:A, 6x0p:B, 6x0p:C, 6x0p:D, 4ynm:A, 4ynm:B, 4ynp:A, 4ynp:B, 4ypa:A, 4ypa:B, 4ypa:C, 4ypa:D, 4ype:A, 4ype:B, 4ypu:A, 4ypu:B
13 6cen:A 226 210 0.2297 0.2876 0.3095 4.81e-21 7crp:I, 7crq:L, 7crq:I, 7crr:I, 5upd:A
14 7ea5:K 228 213 0.2438 0.3026 0.3239 1.18e-20
15 8fbh:A 232 210 0.2191 0.2672 0.2952 2.99e-20 8fbg:A, 8fbg:B, 6kqp:A, 6kqq:A, 6kqq:B, 3ooi:A
16 5lsu:A 231 214 0.2191 0.2684 0.2897 1.04e-19 7cro:I, 7e8d:K, 5lsu:B
17 6nzo:S 233 171 0.1908 0.2318 0.3158 3.18e-16 6px3:S
18 6ven:N 218 154 0.1802 0.2339 0.3312 9.05e-16
19 7bre:B 163 171 0.1908 0.3313 0.3158 1.17e-14 7bre:E
20 2w5z:A 180 171 0.1943 0.3056 0.3216 1.94e-14 5f5e:A, 5f6l:A, 6pwv:C, 6pww:C, 7u5v:A, 6u9k:A, 6u9k:B, 6u9m:A, 6u9m:B, 6u9n:A, 6u9n:B, 6u9r:A, 6u9r:B, 2w5y:A, 7w67:C, 7w6a:C, 7w6i:C, 7w6j:C
21 6ugm:M 188 182 0.1767 0.2660 0.2747 8.87e-14
22 6kiu:K 179 175 0.1943 0.3073 0.3143 1.00e-13 6kiv:K, 6kix:K, 6kiz:K, 7ud5:K
23 7w6l:C 158 145 0.1449 0.2595 0.2828 2.59e-13 5f59:A, 5f6k:C, 5f6k:E, 6kiw:K, 7w6l:E
24 6uh5:M 222 154 0.1625 0.2072 0.2987 7.94e-13 6chg:C
25 5kjh:B 807 202 0.2191 0.0768 0.3069 1.03e-12 5m5g:B
26 5kkl:B 839 202 0.2191 0.0739 0.3069 1.04e-12
27 7at8:A 311 138 0.1625 0.1479 0.3333 1.76e-12
28 5wf7:B 765 201 0.2155 0.0797 0.3035 2.72e-12 5kji:B
29 5tqr:B 809 204 0.2155 0.0754 0.2990 3.30e-12 5bjs:B, 5vk3:B
30 8t9g:C 536 138 0.1625 0.0858 0.3333 4.29e-12 8fyh:A, 8fyh:G
31 5wg6:A 517 145 0.1661 0.0909 0.3241 4.33e-12 5wg6:C
32 5ij7:B 469 138 0.1625 0.0981 0.3333 4.36e-12 6b3w:A, 6b3w:B, 6c23:K, 6c24:K, 5ij7:A, 5ij8:A, 5ij8:B, 4w2r:A, 4w2r:B
33 9c8u:A 475 138 0.1625 0.0968 0.3333 4.43e-12
34 5hyn:A 581 140 0.1661 0.0809 0.3357 4.55e-12 5hyn:F, 5hyn:K, 5hyn:Q, 5ls6:A, 5ls6:G, 5ls6:J, 5ls6:D
35 8tas:E 570 140 0.1661 0.0825 0.3357 4.63e-12 8tb9:E
36 6wkr:C 606 140 0.1661 0.0776 0.3357 4.76e-12 4mi0:A, 4mi5:A, 8t9g:I
37 7td5:F 447 137 0.1625 0.1029 0.3358 6.87e-12
38 7kso:A 395 137 0.1625 0.1165 0.3358 7.73e-12 7ksr:A, 7ktp:A
39 7td5:A 497 137 0.1625 0.0926 0.3358 8.07e-12
40 4z4p:A 161 150 0.1519 0.2671 0.2867 2.16e-10
41 5wfd:B 774 198 0.2085 0.0762 0.2980 1.11e-09 5wfc:B
42 7xpx:K 167 137 0.1201 0.2036 0.2482 0.006 6boz:A, 6boz:B, 2bqz:A, 2bqz:E, 3f9w:B, 3f9w:A, 3f9w:C, 3f9w:D, 3f9x:B, 3f9x:A, 3f9x:C, 3f9x:D, 3f9y:A, 3f9y:B, 3f9z:B, 3f9z:A, 3f9z:C, 3f9z:D, 4ij8:A, 4ij8:B, 5t5g:A, 5teg:A, 5teg:B, 5th7:A, 5th7:B, 5w1y:A, 5w1y:B, 1zkk:A, 1zkk:B, 1zkk:C, 1zkk:D
43 4me3:A 246 55 0.0671 0.0772 0.3455 2.1
44 9fce:B 209 48 0.0707 0.0957 0.4167 2.4 9fce:A
45 4o30:A 217 184 0.1343 0.1751 0.2065 6.9 4o30:B, 5va6:A, 5va6:B, 5vac:A, 5vah:A, 5vah:B, 5vbc:A, 5vbc:B
46 7yrg:L 240 55 0.0601 0.0708 0.3091 7.2
47 8t9f:K 264 55 0.0601 0.0644 0.3091 9.3 4bup:A, 4bup:B, 5cpr:B, 8jhf:K, 8jhg:K, 3s8p:A, 3s8p:B, 5wbv:A, 5wbv:B, 7yrd:K, 7yrg:K
48 3j6b:7 106 38 0.0353 0.0943 0.2632 10.0 5mrc:7, 5mre:7, 5mrf:7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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