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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV
N

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8xxn:3B 536 81 1.0000 0.1511 1.0000 4.93e-52 6zon:B, 6zp4:B, 6zvj:B
2 8pj1:1 588 81 1.0000 0.1378 1.0000 8.07e-52 6fec:w, 2krb:A, 8oz0:I, 8pj2:1, 8pj3:1, 8pj5:1, 8pj6:1
3 4uer:b 572 78 0.3580 0.0507 0.3718 2.42e-09
4 6gsn:p 658 78 0.3580 0.0441 0.3718 2.94e-09 8cah:p, 8cas:p, 6fyx:p, 6fyy:p, 6gsm:p, 6zce:p, 6zu9:p
5 2mb0:B 95 64 0.2346 0.2000 0.2969 9.21e-05
6 4a8x:A 88 58 0.2716 0.2500 0.3793 1.74e-04
7 7dvq:Y 140 57 0.2593 0.1500 0.3684 0.001 8i0p:Y, 8i0r:Y
8 8y6o:W 167 64 0.2222 0.1078 0.2812 0.002
9 2x1f:A 94 54 0.1975 0.1702 0.2963 0.003 2km8:B, 2x1a:A
10 6xh2:A 93 53 0.1852 0.1613 0.2830 0.005 6cmn:A, 3k0j:D, 3k0j:C, 6xh0:A, 6xh1:A, 6xh3:A
11 5kw6:A 201 55 0.2346 0.0945 0.3455 0.012 5kvy:A, 5kvy:B, 5kw1:A, 5kw1:B, 5kw6:B, 7q8a:B, 7q8a:A, 2qfj:A, 2qfj:B, 7z3x:A, 7z3x:B
12 6hpj:B 84 74 0.3333 0.3214 0.3649 0.014
13 4pkd:B 240 35 0.1852 0.0625 0.4286 0.014 1aud:A, 7b0y:c, 3bo2:A, 3bo3:A, 3bo4:A, 4c4w:A, 4c4w:E, 3cul:A, 3cul:B, 3cun:A, 3cun:B, 7d7v:C, 5ddo:G, 5ddo:C, 5ddp:D, 5ddp:C, 5ddq:D, 5ddq:C, 5ddr:D, 5ddr:C, 7dlz:A, 7dlz:B, 1drz:A, 7dwh:A, 7dwh:B, 1dz5:A, 1dz5:B, 3egz:A, 5fj4:A, 5fj4:E, 3g8s:A, 3g8s:B, 3g8s:C, 3g8s:D, 3g8t:A, 3g8t:B, 3g8t:C, 3g8t:D, 3g96:A, 3g96:B, 3g96:C, 3g96:D, 3g9c:A, 3g9c:B, 3g9c:C, 3g9c:D, 8gxb:C, 8gxb:D, 8gxb:F, 8gxc:C, 8gxc:D, 8gxc:F, 3hhn:B, 3hhn:D, 3iin:A, 3irw:P, 3iwn:C, 3iwn:D, 8jy0:A, 8jy0:C, 8jy0:E, 3k0j:A, 3k0j:B, 3l3c:A, 3l3c:B, 3l3c:C, 3l3c:D, 6las:E, 6las:D, 6las:C, 6lau:E, 6lau:D, 6lau:C, 6lax:D, 6lax:E, 6lax:C, 6laz:D, 6laz:E, 6laz:C, 1m5k:C, 1m5k:F, 1m5o:C, 1m5o:F, 1m5p:C, 1m5p:F, 1m5v:C, 1m5v:F, 3mum:P, 3mur:P, 3mut:P, 3muv:P, 3mxh:P, 2nz4:A, 2nz4:B, 2nz4:C, 2nz4:D, 2oih:A, 2oj3:A, 3p49:B, 4pr6:A, 4prf:A, 7qr3:A, 7qr3:B, 7qr4:A, 6qx9:1A, 3r1h:A, 3r1h:D, 3r1l:A, 3r1l:D, 1sj3:P, 1sj4:P, 1sjf:A, 6sqn:A, 6sqn:B, 6sqn:C, 6sqq:AAA, 6sqq:BBB, 6sqq:CCC, 1u6b:A, 3ucu:P, 3ucz:P, 3ud3:P, 3ud4:P, 1urn:A, 1urn:B, 1urn:C, 1vbx:A, 1vby:A, 1vbz:A, 1vc0:A, 1vc5:A, 1vc6:A, 7vpx:M, 4w90:B, 4w92:B, 1zzn:A
14 4pkd:B 240 53 0.1852 0.0625 0.2830 0.082 1aud:A, 7b0y:c, 3bo2:A, 3bo3:A, 3bo4:A, 4c4w:A, 4c4w:E, 3cul:A, 3cul:B, 3cun:A, 3cun:B, 7d7v:C, 5ddo:G, 5ddo:C, 5ddp:D, 5ddp:C, 5ddq:D, 5ddq:C, 5ddr:D, 5ddr:C, 7dlz:A, 7dlz:B, 1drz:A, 7dwh:A, 7dwh:B, 1dz5:A, 1dz5:B, 3egz:A, 5fj4:A, 5fj4:E, 3g8s:A, 3g8s:B, 3g8s:C, 3g8s:D, 3g8t:A, 3g8t:B, 3g8t:C, 3g8t:D, 3g96:A, 3g96:B, 3g96:C, 3g96:D, 3g9c:A, 3g9c:B, 3g9c:C, 3g9c:D, 8gxb:C, 8gxb:D, 8gxb:F, 8gxc:C, 8gxc:D, 8gxc:F, 3hhn:B, 3hhn:D, 3iin:A, 3irw:P, 3iwn:C, 3iwn:D, 8jy0:A, 8jy0:C, 8jy0:E, 3k0j:A, 3k0j:B, 3l3c:A, 3l3c:B, 3l3c:C, 3l3c:D, 6las:E, 6las:D, 6las:C, 6lau:E, 6lau:D, 6lau:C, 6lax:D, 6lax:E, 6lax:C, 6laz:D, 6laz:E, 6laz:C, 1m5k:C, 1m5k:F, 1m5o:C, 1m5o:F, 1m5p:C, 1m5p:F, 1m5v:C, 1m5v:F, 3mum:P, 3mur:P, 3mut:P, 3muv:P, 3mxh:P, 2nz4:A, 2nz4:B, 2nz4:C, 2nz4:D, 2oih:A, 2oj3:A, 3p49:B, 4pr6:A, 4prf:A, 7qr3:A, 7qr3:B, 7qr4:A, 6qx9:1A, 3r1h:A, 3r1h:D, 3r1l:A, 3r1l:D, 1sj3:P, 1sj4:P, 1sjf:A, 6sqn:A, 6sqn:B, 6sqn:C, 6sqq:AAA, 6sqq:BBB, 6sqq:CCC, 1u6b:A, 3ucu:P, 3ucz:P, 3ud3:P, 3ud4:P, 1urn:A, 1urn:B, 1urn:C, 1vbx:A, 1vby:A, 1vbz:A, 1vc0:A, 1vc5:A, 1vc6:A, 7vpx:M, 4w90:B, 4w92:B, 1zzn:A
15 3smz:A 280 35 0.1728 0.0500 0.4000 0.022
16 3smz:A 280 74 0.2593 0.0750 0.2838 1.3
17 6qx9:1K 201 52 0.2222 0.0896 0.3462 0.025 7b0y:b, 4pjo:K, 4pjo:k, 4pjo:N, 4pjo:n, 8r08:1K, 7vpx:O
18 8h6e:4R 106 53 0.1975 0.1509 0.3019 0.049 8h6j:4R, 8qp8:R, 8qp9:R, 8qpk:R, 6qw6:R, 6qx9:R, 8qxd:R, 8r08:R, 8r0a:R
19 6gd2:A 84 69 0.2593 0.2500 0.3043 0.051 6g2k:A, 6g2k:B, 6gc5:A, 6gc5:B, 6gc5:C, 6gc5:D, 6gd2:B, 6gd3:B, 6gd3:C
20 6r5k:H 394 57 0.1975 0.0406 0.2807 0.059 6r5k:D, 6r5k:F
21 6r5k:H 394 55 0.2099 0.0431 0.3091 0.17 6r5k:D, 6r5k:F
22 6r5k:H 394 38 0.1605 0.0330 0.3421 0.36 6r5k:D, 6r5k:F
23 4xtr:B 311 34 0.1605 0.0418 0.3824 0.062 3b2e:A, 3b2e:D, 5bw8:B, 4pwx:A, 4pwx:B, 3vlc:A, 2woj:A, 2woj:B, 2woj:D, 4xtr:A, 4xvu:H, 4xvu:A, 4xvu:B, 4xvu:G, 4xwo:A, 4xwo:G, 4xwo:M, 4xwo:N, 4xwo:S, 4xwo:B, 4xwo:H, 4xwo:T, 3zs8:B, 3zs9:A, 3zs9:B
24 2leb:A 101 56 0.1605 0.1287 0.2321 0.065 2lec:A
25 2rra:A 99 55 0.1728 0.1414 0.2545 0.11 2kxn:B
26 3sja:A 338 37 0.1605 0.0385 0.3514 0.11 3a36:B, 3a37:B, 3b2e:B, 3b2e:C, 3sja:E
27 3a36:A 314 37 0.1605 0.0414 0.3514 0.12 3a37:A, 5bwk:N
28 2adb:A 127 61 0.2222 0.1417 0.2951 0.12 3zzy:A, 3zzy:B, 3zzz:A, 3zzz:B
29 2fy1:A 108 51 0.1728 0.1296 0.2745 0.13
30 2mxy:A 105 52 0.2099 0.1619 0.3269 0.21 2mz1:A
31 8by6:B 152 52 0.2222 0.1184 0.3462 0.45 7abg:A1, 6d0y:A, 1h2t:Z, 1h2u:X, 1h2u:Y, 1n52:B, 5oo6:B, 5oo6:E, 5oo6:H, 5oo6:K, 5oo6:N, 5oo6:Q, 5oo6:T, 5oo6:W, 5oob:D, 5oob:J, 5oob:B, 5oob:G, 8pmp:B, 8pnt:B, 8srr:B, 8suy:B
32 7abg:B 169 53 0.1605 0.0769 0.2453 0.53 7a5p:X, 1a9n:B, 1a9n:D, 7abi:B, 6ah0:p, 6ahd:p, 8c6j:Y, 8ch6:s, 7evo:G, 9fmd:p, 8h6e:2C, 8h6j:2C, 8h6k:2C, 8h6l:2C, 8hk1:G, 8i0p:p, 8i0r:p, 8i0s:p, 8i0t:p, 8i0u:p, 8i0v:p, 8i0w:p, 6icz:p, 6id0:p, 6id1:p, 5mqf:X, 6qdv:Y, 8qo9:2B, 6qx9:2B, 8qxd:2B, 8qzs:2B, 8r08:2B, 8r09:2B, 8r0a:2B, 8r0b:2B, 8rm5:2B, 7vpx:G, 7w59:p, 7w5a:p, 7w5b:p, 5xjc:p, 6y53:b, 6y5q:b, 5yzg:p, 5z56:p, 5z57:p, 5z58:p
33 4f02:A 175 56 0.1728 0.0800 0.2500 0.56 1cvj:A, 1cvj:B, 1cvj:C, 1cvj:D, 1cvj:E, 1cvj:F, 1cvj:G, 1cvj:H, 4f02:D
34 2mkc:A 118 65 0.2222 0.1525 0.2769 0.59 2my3:A
35 2i2y:A 150 25 0.1358 0.0733 0.4400 0.73 9asq:H, 5bmg:A, 5bmg:B, 5bmg:H, 5bmg:D, 5bmg:E, 5bmg:F, 5bmg:G, 5bmh:A, 3v3x:C, 3v3x:D
36 6ohj:B 187 52 0.1975 0.0856 0.3077 0.76
37 7dco:X 128 65 0.2222 0.1406 0.2769 0.77 5gm6:V, 5zwm:X
38 8hkj:G 401 26 0.1358 0.0274 0.4231 0.87 8hkj:I
39 4lmz:A 176 46 0.1852 0.0852 0.3261 0.89 3nmr:A, 3nna:A, 3nnc:A, 3nnh:A, 3nnh:C, 3nnh:B, 3nnh:D
40 2b7j:A 158 69 0.2469 0.1266 0.2899 0.99 2b7j:C
41 2xb2:D 89 54 0.2099 0.1910 0.3148 0.99 2xb2:Z
42 8hkj:B 430 26 0.1358 0.0256 0.4231 1.0 8hkj:A, 8hkj:C, 8hkj:D, 8hkj:E, 8hkj:F, 8hkj:H, 8hkj:J, 8hkj:K, 8hkj:L
43 1n1z:A 537 46 0.1605 0.0242 0.2826 1.1 1n1b:A, 1n1b:B, 1n1z:B, 1n20:A, 1n20:B, 1n21:A, 1n22:A, 1n22:B, 1n23:A, 1n23:B, 1n24:A, 1n24:B
44 7csz:A 175 25 0.1111 0.0514 0.3600 1.2
45 6m75:A 167 41 0.1975 0.0958 0.3902 1.3
46 6f4h:C 96 47 0.1605 0.1354 0.2766 1.4 6f4g:B, 6f4g:E, 6f4h:A, 6f4h:E
47 7ctq:A 429 22 0.1111 0.0210 0.4091 1.4 7ctq:B
48 1fje:B 175 32 0.1358 0.0629 0.3438 2.0 1rkj:A
49 4hx3:A 134 37 0.1605 0.0970 0.3514 2.5 1c7k:A, 4hx3:C, 4hx3:E, 4hx3:G, 4hx3:I, 4hx3:K, 1kuh:A
50 5ith:A 80 55 0.1852 0.1875 0.2727 2.7 5o3j:A
51 5z2g:A 477 32 0.1235 0.0210 0.3125 3.7 5z2g:B
52 4f9g:A 170 41 0.1481 0.0706 0.2927 4.2 6mx3:A
53 1reo:A 484 37 0.1481 0.0248 0.3243 5.0 1tdk:A, 1tdn:A, 1tdo:A
54 7c79:B 793 20 0.1235 0.0126 0.5000 5.3 6agb:B, 6ah3:B, 7c7a:B, 6w6v:B
55 4qtu:B 191 28 0.1235 0.0524 0.3571 6.0 4qtu:D
56 8i0v:4 161 52 0.1852 0.0932 0.2885 6.2
57 8uu4:h 131 60 0.2222 0.1374 0.3000 8.4 7nhn:i, 8uu5:h, 8uu6:h, 8uu7:h, 8uu8:h, 8uu9:h
58 1srd:A 154 40 0.1235 0.0649 0.2500 9.2 1srd:B, 1srd:C, 1srd:D
59 7slp:B 321 44 0.1481 0.0374 0.2727 10.0 6d12:A, 6d12:B, 7slq:B, 4wkr:A, 4wkr:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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