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BioLiP
>protein
DSTGLLRYCVQKHDASRLHYDFRLELDGTLKSWAVPKGPCLDPAVKRLAVQVEDHPLDYADFEGSIPQHYGAGDVIVWDR
GAWTPLDDPREGLEKGHLSFALDGEKLSGRWHLIRTNLRGKQSQWFLVKAKDGEARSLDRFDVLKERPDSVLSERTL

The query sequence (length=157) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3n9b:B 157 157 1.0000 1.0000 1.0000 5.78e-114 3n9b:A, 3n9d:A
2 5dmp:A 169 160 0.4904 0.4556 0.4813 1.47e-43
3 3p43:A 124 124 0.4076 0.5161 0.5161 1.64e-37
4 3p4h:A 118 125 0.3631 0.4831 0.4560 5.70e-31 3ta5:A, 3ta7:A
5 5wyj:BE 753 100 0.1592 0.0332 0.2500 1.0 5wyk:BE
6 8t5j:A 154 63 0.1019 0.1039 0.2540 1.5
7 8bz6:A 606 30 0.0828 0.0215 0.4333 3.9 8bz6:B, 8bz6:C, 8bz6:D, 8bz6:E, 8bz6:F, 8bz7:A, 8bz7:B, 8bz7:C, 8bz7:D, 8bz7:E, 8bz7:F, 8bz8:A, 8bz8:B, 8bz8:C, 8bz8:D, 8bz8:E, 8bz8:F
8 4qvh:A 596 66 0.1146 0.0302 0.2727 4.0 6ct5:A, 6ct5:B, 7ed0:A, 8gkf:A, 8gkf:B, 8gkf:C, 8gkf:D, 8gkf:E, 8gkf:H, 8gkf:I, 7n8e:A, 7n8e:B, 7n8l:A, 7n8l:B, 7n8m:A, 7n8m:B, 4qjk:A, 4qvh:B, 8qzi:A, 8qzi:B, 8qzi:C, 8qzi:D, 8qzj:A, 8qzj:B, 8qzj:C, 8qzj:D, 4u89:A
9 5tzs:T 749 32 0.0764 0.0160 0.3750 4.1
10 6lqs:BE 823 32 0.0764 0.0146 0.3750 4.6 7d63:BE, 6lqr:BE, 6lqt:BE, 6lqv:BE, 6nd4:T
11 8gkf:G 197 68 0.1338 0.1066 0.3088 4.7
12 7d5s:BE 865 32 0.0764 0.0139 0.3750 4.8 7ajt:UU, 6ke6:BE, 6lqp:BE, 6lqq:BE, 6lqu:BE, 7suk:LT, 5wlc:LT, 6zqa:UU, 6zqb:UU, 6zqc:UU
13 7d4i:BE 890 32 0.0764 0.0135 0.3750 5.2 7aju:UU, 6zqd:UU, 6zqf:UU
14 4g41:B 236 36 0.0701 0.0466 0.3056 5.5
15 4biv:A 269 48 0.0955 0.0558 0.3125 6.1 4biu:C, 4biu:E, 4biu:F, 4biv:B, 4biw:A, 4biw:B, 4bix:A, 4biy:A, 4biy:C, 4biz:A, 4biz:C, 4biz:E, 4biz:F, 4cb0:A, 4cb0:B, 5lfk:A, 5lfk:B
16 3hia:B 83 33 0.0701 0.1325 0.3333 6.4 3hia:A, 3hia:C
17 8df7:A 850 33 0.1019 0.0188 0.4848 6.5 8df7:B, 8df8:A, 8df8:B, 8df9:B, 8dfb:A, 8dfb:B, 4gfj:A, 3m6k:B, 3m6z:A, 3m6z:B
18 1eba:A 212 30 0.0764 0.0566 0.4000 7.3 1eba:B, 1ebp:A, 1ebp:B
19 1r17:A 321 32 0.0828 0.0405 0.4062 9.3 1r17:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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