Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSR
LIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAILAGA
DKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGT
LFHAQATPLENRKRWIFGAPPAGEITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSD
ALRRIAGHHSQEIDAILGYEYGPVAVHRDDMITR

The query sequence (length=354) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2j5t:D 365 365 1.0000 0.9699 0.9699 0.0 2j5t:A, 2j5t:B, 2j5t:C, 2j5t:E, 2j5t:F, 2j5t:G
2 2j5v:B 325 354 0.9153 0.9969 0.9153 0.0 2j5v:A
3 7wx3:B 258 247 0.2542 0.3488 0.3644 4.02e-36 7wx3:A, 7wx3:C, 7wx3:D, 7wx4:A
4 8j0g:B 274 267 0.2599 0.3358 0.3446 2.83e-34 8j0e:B, 8j0f:C, 8j0f:A, 8j0f:B, 8j0f:D, 8j27:B, 8j28:C, 8y2h:B, 8y2h:F, 8y2h:G, 8y2h:H
5 7f5x:A 236 239 0.2316 0.3475 0.3431 8.09e-34 7f5x:B, 7f5x:C, 7f5x:D
6 2ako:A 241 247 0.2232 0.3278 0.3198 1.15e-26 2ako:B, 2ako:C, 2ako:D
7 7lnu:B 261 219 0.1610 0.2184 0.2603 7.75e-06 7lnt:B, 7lnw:A, 7lnw:B, 7lnx:B, 7n9d:A, 7n9d:B
8 7lnu:A 239 204 0.1497 0.2218 0.2598 1.69e-05 7lnt:A, 7lnx:A
9 2bmu:B 226 84 0.0791 0.1239 0.3333 5.16e-04 2bmu:A, 2bri:A, 2bri:B, 2ji5:A, 2ji5:B
10 3lkk:B 238 123 0.0960 0.1429 0.2764 0.001 3lkk:A, 3ll5:A, 3ll5:B, 3ll5:C, 3ll5:D
11 8u0k:A 247 206 0.1328 0.1903 0.2282 0.003 8u0k:B, 8u0l:A, 8u0l:B, 8u0m:A, 8u0m:B, 8u0n:A, 8u0n:B
12 3ll9:B 249 114 0.0847 0.1205 0.2632 0.013 3ll9:A
13 1ze1:D 284 84 0.0763 0.0951 0.3214 0.016
14 1ze1:A 308 84 0.0763 0.0877 0.3214 0.018 2ab4:A, 1r3e:A, 1ze1:B, 1ze1:C, 1ze2:A
15 3wwm:A 269 116 0.0989 0.1301 0.3017 0.031
16 5xc3:A 168 108 0.0876 0.1845 0.2870 0.050 5xc5:A
17 3c1m:C 468 84 0.0734 0.0556 0.3095 0.093 3c1m:A, 3c1m:B, 3c1m:D, 3c1n:A, 3c1n:B, 3c1n:C, 3c1n:D, 3c20:A, 3c20:B, 2hmf:A, 2hmf:B, 2hmf:C, 2hmf:D
18 5yei:C 397 54 0.0593 0.0529 0.3889 0.18 5yei:D, 5yei:B, 5yei:A, 5yei:F, 5yei:E, 5yei:H, 5yei:G
19 3ek5:A 241 99 0.0819 0.1203 0.2929 0.26 3ek5:B, 3ek5:C, 3ek5:F, 3ek5:E, 3ek5:D
20 6yt3:B 376 93 0.0678 0.0638 0.2581 1.3 4f6t:B, 6gu5:B, 6guj:B, 6gx4:B, 6h6w:B, 6h73:B, 6h74:B, 6h8b:B, 6h8h:B, 4ndo:B, 4ndp:B, 4ndq:B, 4ndr:B, 5o5w:B, 6ris:B, 6rj4:B, 6rj4:D, 6rj4:F, 6rkd:B, 6rkd:F, 6rkd:D, 6rkd:H, 6rkd:J, 6rkd:L, 6rke:B, 6rke:D, 6rke:F, 6rke:H, 6rke:J, 6rke:L, 7z5j:B, 7z5j:D, 7z5j:F, 7z5j:H, 7z5j:J, 7z5j:L, 7zqq:B, 7zr4:B, 7zse:B
21 1ze2:B 218 64 0.0621 0.1009 0.3438 1.4
22 5ljf:A 321 36 0.0367 0.0405 0.3611 3.4 5ljf:B, 4m24:A, 7p6h:A, 7p6h:B, 7p6j:A, 7p6j:B, 7p6j:C, 7p6j:D, 6zz3:A, 6zz3:B, 6zz3:C, 6zz3:D
23 6vef:A 844 74 0.0593 0.0249 0.2838 4.8 6vef:B
24 2v5h:B 289 65 0.0621 0.0761 0.3385 5.2 2jj4:A, 2jj4:B, 2v5h:A, 2v5h:C, 2v5h:D, 2v5h:E, 2v5h:F
25 3l76:A 585 63 0.0508 0.0308 0.2857 5.4 3l76:B
26 6rm3:LY0 134 28 0.0311 0.0821 0.3929 6.5
27 2bty:A 282 140 0.1158 0.1454 0.2929 7.0 2bty:B, 2bty:C

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218