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BioLiP
>protein
DSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSR
LIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAILAGA
DKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVI
GDVMEGISVGTLFHAQATPLENRKRWIFGAPPAGEITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRD
IAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAVHRDDMITR

The query sequence (length=365) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2j5t:D 365 365 1.0000 1.0000 1.0000 0.0 2j5t:A, 2j5t:B, 2j5t:C, 2j5t:E, 2j5t:F, 2j5t:G
2 2j5v:B 325 365 0.8904 1.0000 0.8904 0.0 2j5v:A
3 8j0g:B 274 268 0.2630 0.3504 0.3582 6.54e-37 8j0e:B, 8j0f:C, 8j0f:A, 8j0f:B, 8j0f:D, 8j27:B, 8j28:C, 8y2h:B, 8y2h:F, 8y2h:G, 8y2h:H
4 7wx3:B 258 258 0.2466 0.3488 0.3488 6.74e-35 7wx3:A, 7wx3:C, 7wx3:D, 7wx4:A
5 7f5x:A 236 250 0.2247 0.3475 0.3280 7.49e-32 7f5x:B, 7f5x:C, 7f5x:D
6 2ako:A 241 256 0.2247 0.3402 0.3203 3.06e-29 2ako:B, 2ako:C, 2ako:D
7 7lnu:B 261 235 0.1726 0.2414 0.2681 2.91e-07 7lnt:B, 7lnw:A, 7lnw:B, 7lnx:B, 7n9d:A, 7n9d:B
8 2bmu:B 226 85 0.0822 0.1327 0.3529 1.86e-06 2bmu:A, 2bri:A, 2bri:B, 2ji5:A, 2ji5:B
9 7lnu:A 239 204 0.1452 0.2218 0.2598 2.09e-05 7lnt:A, 7lnx:A
10 8u0k:A 247 206 0.1288 0.1903 0.2282 0.003 8u0k:B, 8u0l:A, 8u0l:B, 8u0m:A, 8u0m:B, 8u0n:A, 8u0n:B
11 3lkk:B 238 42 0.0466 0.0714 0.4048 0.004 3lkk:A, 3ll5:A, 3ll5:B, 3ll5:C, 3ll5:D
12 3wwm:A 269 121 0.0904 0.1227 0.2727 0.008
13 1ze1:D 284 84 0.0740 0.0951 0.3214 0.013
14 1ze1:A 308 84 0.0740 0.0877 0.3214 0.015 2ab4:A, 1r3e:A, 1ze1:B, 1ze1:C, 1ze2:A
15 5xc3:A 168 107 0.0822 0.1786 0.2804 0.046 5xc5:A
16 3ll9:B 249 125 0.0849 0.1245 0.2480 0.070 3ll9:A
17 3c1m:C 468 84 0.0712 0.0556 0.3095 0.12 3c1m:A, 3c1m:B, 3c1m:D, 3c1n:A, 3c1n:B, 3c1n:C, 3c1n:D, 3c20:A, 3c20:B, 2hmf:A, 2hmf:B, 2hmf:C, 2hmf:D
18 5yei:C 397 32 0.0493 0.0453 0.5625 0.20 5yei:D, 5yei:B, 5yei:A, 5yei:F, 5yei:E, 5yei:H, 5yei:G
19 2bty:A 282 149 0.1178 0.1525 0.2886 0.23 2bty:B, 2bty:C
20 3ek5:A 241 112 0.0932 0.1411 0.3036 0.59 3ek5:B, 3ek5:C, 3ek5:F, 3ek5:E, 3ek5:D
21 1ze2:B 218 76 0.0630 0.1055 0.3026 1.3
22 6yt3:B 376 31 0.0274 0.0266 0.3226 3.1 4f6t:B, 6gu5:B, 6guj:B, 6gx4:B, 6h6w:B, 6h73:B, 6h74:B, 6h8b:B, 6h8h:B, 4ndo:B, 4ndp:B, 4ndq:B, 4ndr:B, 5o5w:B, 6ris:B, 6rj4:B, 6rj4:D, 6rj4:F, 6rkd:B, 6rkd:F, 6rkd:D, 6rkd:H, 6rkd:J, 6rkd:L, 6rke:B, 6rke:D, 6rke:F, 6rke:H, 6rke:J, 6rke:L, 7z5j:B, 7z5j:D, 7z5j:F, 7z5j:H, 7z5j:J, 7z5j:L, 7zqq:B, 7zr4:B, 7zse:B
23 5ljf:A 321 36 0.0356 0.0405 0.3611 3.5 5ljf:B, 4m24:A, 7p6h:A, 7p6h:B, 7p6j:A, 7p6j:B, 7p6j:C, 7p6j:D, 6zz3:A, 6zz3:B, 6zz3:C, 6zz3:D
24 2v5h:B 289 65 0.0603 0.0761 0.3385 5.5 2jj4:A, 2jj4:B, 2v5h:A, 2v5h:C, 2v5h:D, 2v5h:E, 2v5h:F
25 6rm3:LY0 134 28 0.0301 0.0821 0.3929 6.5
26 6vef:A 844 74 0.0575 0.0249 0.2838 6.7 6vef:B
27 1tg6:E 196 43 0.0301 0.0561 0.2558 9.3 6bba:A, 6bba:G, 6bba:B, 6bba:C, 6bba:D, 6bba:E, 6bba:F, 6dl7:A, 6dl7:G, 6dl7:B, 6dl7:C, 6dl7:D, 6dl7:E, 6dl7:F, 6h23:A, 6h23:B, 6h23:C, 6h23:D, 6h23:E, 6h23:F, 6h23:G, 6h23:H, 6h23:N, 6h23:I, 6h23:J, 6h23:K, 6h23:L, 6h23:M, 8hgk:A, 8hgk:G, 8hgk:B, 8hgk:C, 8hgk:D, 8hgk:E, 8hgk:F, 8hgk:H, 8hgk:N, 8hgk:I, 8hgk:J, 8hgk:K, 8hgk:L, 8hgk:M, 8i7x:B, 8i7x:C, 8i7x:A, 8i7x:D, 8i7x:E, 8i7x:F, 8i7x:G, 8i7x:H, 8i7x:N, 8i7x:I, 8i7x:J, 8i7x:K, 8i7x:L, 8i7x:M, 1tg6:A, 1tg6:B, 1tg6:C, 1tg6:D, 1tg6:F, 1tg6:G, 7uvm:A, 7uvm:G, 7uvm:B, 7uvm:C, 7uvm:D, 7uvm:E, 7uvm:F, 7uvn:A, 7uvn:G, 7uvn:B, 7uvn:C, 7uvn:D, 7uvn:E, 7uvn:F, 7uvr:A, 7uvr:G, 7uvr:B, 7uvr:C, 7uvr:D, 7uvr:E, 7uvr:F, 7uvu:A, 7uvu:G, 7uvu:B, 7uvu:C, 7uvu:D, 7uvu:E, 7uvu:F, 7uw0:A, 7uw0:G, 7uw0:B, 7uw0:C, 7uw0:D, 7uw0:E, 7uw0:F, 7vp9:A, 7vp9:G, 7vp9:B, 7vp9:C, 7vp9:D, 7vp9:E, 7vp9:F, 7vp9:H, 7vp9:N, 7vp9:I, 7vp9:J, 7vp9:K, 7vp9:L, 7vp9:M, 8w7c:A, 8w7c:F, 8w7c:B, 8w7c:C, 8w7c:D, 8w7c:E, 8w7c:G, 8w7e:A, 8w7e:B, 8w7e:G, 8w7e:C, 8w7e:D, 8w7e:H, 8w7e:E, 8w7e:F, 8w7e:K, 8w7e:M, 8w7e:I, 8w7e:N, 8w7e:J, 8w7e:L, 7wh5:A, 7wh5:G, 7wh5:B, 7wh5:C, 7wh5:D, 7wh5:E, 7wh5:F, 7wh5:H, 7wh5:N, 7wh5:I, 7wh5:J, 7wh5:K, 7wh5:L, 7wh5:M, 8ylb:A, 8ylb:G, 8ylb:B, 8ylb:C, 8ylb:D, 8ylb:E, 8ylb:F, 8ylb:H, 8ylb:N, 8ylb:I, 8ylb:J, 8ylb:K, 8ylb:L, 8ylb:M

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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