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BioLiP
>protein
DSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPR
TKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQG

The query sequence (length=125) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3mo8:A 127 125 1.0000 0.9843 1.0000 2.50e-91 5c6s:A, 2x4w:A, 2x4x:A, 2x4x:C, 2x4x:E, 2x4x:G, 2x4y:A, 2x4y:C, 2x4y:E, 2x4y:G, 2x4y:I, 2x4y:K, 2x4y:M, 2x4y:O
2 4z02:A 119 118 0.6080 0.6387 0.6441 1.30e-55 7lh9:B
3 7lh9:C 107 119 0.5600 0.6542 0.5882 1.10e-48 4z02:B
4 5ciu:B 121 21 0.0720 0.0744 0.4286 0.50
5 5nrr:B 137 21 0.0720 0.0657 0.4286 0.74 5ciu:A, 5nr3:A, 5nr3:B, 5nrr:A, 5nrs:A, 5nrs:B, 5nrv:D, 5nrv:A, 5nv0:A, 5nv0:B, 5nv2:A, 5nv2:B, 5nv7:A, 5nv7:B, 6r3e:A
6 3qj6:A 90 19 0.0960 0.1333 0.6316 0.98 3qby:B
7 9exy:B 135 21 0.0880 0.0815 0.5238 0.98 6ue6:C, 6ue6:F
8 9exw:A 148 21 0.0880 0.0743 0.5238 1.0 9exw:B, 9exx:A, 9exx:B, 9exy:A, 7lmt:A, 7lmt:H, 7lmt:B, 7lmt:C, 7lmt:D, 7lmt:E, 7lmt:F, 7lmt:G, 7mdn:A, 7mdn:H, 7mdn:B, 7mdn:C, 7mdn:D, 7mdn:E, 7mdn:F, 7mdn:G, 6ue6:A, 6ue6:B, 6ue6:D, 6ue6:E, 6ue6:G, 6ue6:H, 5vc8:A, 7vln:B, 6xcg:A, 6xcg:B, 6xcg:C
9 6iit:B 100 19 0.0960 0.1200 0.6316 1.1 6iiq:A, 6iiq:B, 6iir:A, 6iir:B, 6iis:B, 6iis:A, 6iit:A
10 1q20:A 294 54 0.1440 0.0612 0.3333 1.2 1q1q:A, 1q1z:A, 1q22:A
11 6kcp:B 84 17 0.0880 0.1310 0.6471 1.4 6kco:O, 6kco:F, 6kco:M, 6kco:E, 6kco:P, 6kco:B, 6kco:H, 6kco:D, 6kco:I, 6kco:N, 6kco:G, 6kco:J, 6kco:L, 6kco:A, 6kco:C, 6kco:K
12 5xsk:A 90 17 0.0880 0.1222 0.6471 1.6
13 8cbn:L 86 17 0.0720 0.1047 0.5294 3.5 8cbn:K, 8cbq:K, 8pc5:K, 8pc6:L, 8pc6:K, 8peo:K, 8pep:L, 8pep:K, 6s01:K
14 1sdd:B 601 69 0.1520 0.0316 0.2754 4.2
15 4g23:A 476 29 0.0720 0.0189 0.3103 4.4 6bv5:A, 6bv6:A, 6bv8:A, 6bv9:A, 4g24:A, 4g25:A, 4g26:A, 6lvr:C, 6lvr:A
16 6g2b:A 123 71 0.1920 0.1951 0.3380 4.9 6g24:A, 6g25:A, 6g27:A, 6g29:A, 6g2c:A, 6g2e:A, 6g2f:A, 6g2o:A
17 2zze:A 744 32 0.0880 0.0148 0.3438 5.4 2zze:B, 2zzf:A, 2zzg:A, 2zzg:B
18 3m0f:A 203 47 0.1200 0.0739 0.3191 7.3 3m0f:B
19 3vw4:A 122 42 0.0800 0.0820 0.2381 8.6 3vw4:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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