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BioLiP
>protein
DSATHIKFSKRDEDGKELAGATMELRDSSGKTISTWISDGQVKDFYLYPGKYTFVETAAPDGYEVATAITFTVNEQGQVT
VNG

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5tth:A 671 82 0.9880 0.1222 1.0000 2.13e-52 6d14:A, 7exp:A, 4ipe:A, 4ivg:A, 4iyn:A, 4j0b:A, 4mli:A, 4mli:C, 4mls:A, 5tvu:A, 5tvw:A, 5tvx:A
2 6m48:A 813 86 0.3735 0.0381 0.3605 8.17e-04 6m3y:A, 6m48:B
3 6m48:A 813 38 0.1807 0.0185 0.3947 1.8 6m3y:A, 6m48:B
4 6fwv:A 522 65 0.2530 0.0402 0.3231 0.005 6fwv:B
5 2ww8:A 815 75 0.3133 0.0319 0.3467 0.032
6 3kpt:B 355 75 0.2892 0.0676 0.3200 0.11
7 5jsc:A 388 71 0.2651 0.0567 0.3099 0.26 5jsc:B, 5jsc:C, 5jsc:D
8 4p0d:A 471 66 0.2771 0.0488 0.3485 0.92
9 7mw8:C 385 48 0.1928 0.0416 0.3333 2.8 2gsn:A, 2gsn:B, 2gso:A, 2gso:B, 2gsu:A, 2gsu:B, 7mw8:A, 7mw8:D, 7mw8:B, 7mw8:E, 7mw8:F, 7n1s:A, 7n1s:B, 2rh6:A, 2rh6:B
10 5l5w:Y 211 72 0.2530 0.0995 0.2917 3.1 5l5w:K, 5l5x:Y, 5l5x:K, 5l5y:Y, 5l5y:K, 5l5z:Y, 5l5z:K, 5l60:Y, 5l60:K, 5l61:Y, 5l61:K, 5l62:Y, 5l62:K, 5l63:Y, 5l63:K, 5l64:Y, 5l64:K
11 5fgs:D 123 20 0.1325 0.0894 0.5500 3.9
12 3bwr:A 267 45 0.1687 0.0524 0.3111 4.0 3bwr:C, 3bwr:E
13 5g5g:B 316 54 0.2410 0.0633 0.3704 4.9 5g5h:B
14 8hsg:I 1096 38 0.1807 0.0137 0.3947 5.0 3aoi:C, 3aoi:H, 3aoi:M, 4gzy:C, 4gzz:C
15 2a68:C 1119 38 0.1807 0.0134 0.3947 5.1 2a68:M, 2a69:C, 2a69:M, 2a6h:C, 2a6h:M, 3aoh:C, 2be5:C, 2be5:M, 6cuu:C, 5d4c:C, 5d4c:M, 5d4d:C, 5d4d:M, 5d4e:C, 5d4e:M, 3dxj:C, 3dxj:M, 5e17:C, 5e18:C, 7eh0:C, 7eh1:C, 7eh2:C, 7eh2:M, 3eql:C, 3eql:M, 4g7h:C, 4g7h:M, 4g7o:C, 4g7o:M, 4g7z:C, 4g7z:M, 8hsr:I, 5i2d:C, 5i2d:N, 1i6v:C, 1iw7:C, 1iw7:M, 6kqd:C, 6kqd:M, 6kqe:C, 6kqf:C, 6kqg:C, 6kqh:C, 6kql:C, 6kqm:C, 6kqn:C, 6l74:C, 6lts:C, 6m6a:C, 6m6c:C, 7mlb:C, 7mli:C, 7mlj:C, 4mq9:C, 2o5i:C, 2o5i:M, 2o5j:C, 2o5j:M, 4oin:C, 4oio:C, 4oip:C, 4oiq:C, 4oir:C, 6ovr:C, 6ovy:C, 6ow3:C, 6oy5:C, 6oy6:C, 6oy7:C, 6p70:C, 6p71:C, 2ppb:C, 2ppb:M, 4q4z:C, 4q5s:C, 7rdq:C, 1smy:C, 1smy:M, 5tmc:C, 5tmf:C, 5vo8:C, 5voi:C, 8w8n:C, 8w8o:C, 8w8p:C, 6wox:C, 6woy:C, 4wqs:C, 4wqs:M, 5x21:C, 5x22:C, 5x22:M, 4xln:C, 4xln:I, 4xlr:C, 4xlr:I, 1ynj:C, 1ynn:C, 1zyr:C, 1zyr:M
16 5oln:B 434 32 0.1446 0.0276 0.3750 6.6 5oln:A
17 4aq1:A 721 22 0.1084 0.0125 0.4091 7.1 4aq1:C
18 8ppl:Ix 455 66 0.2169 0.0396 0.2727 9.0 9bln:x, 8pj1:x, 8pj2:x, 8pj3:x, 8pj4:x, 8pj5:x, 8pj6:x, 7qp6:x, 8rg0:x, 8xxn:3N, 6zon:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218