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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFV
YKFVSYPEILNMSRNDYIHSGLYSSFTLNSLN

The query sequence (length=112) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1hbx:G 112 112 1.0000 1.0000 1.0000 6.05e-81 1bc7:C, 1bc8:C, 1hbx:H, 1k6o:A
2 1dux:C 86 86 0.6071 0.7907 0.7907 1.23e-45 1dux:F
3 4uuv:A 96 89 0.4821 0.5625 0.6067 9.37e-38 4bnc:A, 4uno:A, 4uuv:D, 4uuv:G, 4uuv:J, 4uuv:M, 4uuv:P, 4uuv:S, 4uuv:V
4 6vgd:A 98 80 0.4375 0.5000 0.6125 2.91e-32 5e8g:A, 5e8g:B, 5e8g:C, 5e8g:D, 5e8i:A, 5e8i:D, 5e8i:G, 5e8i:J, 4iri:A, 5jvt:A, 5jvt:D, 5jvt:G, 6vg2:A, 6vg2:D, 6vg8:A, 6vge:A, 6vgg:A, 5ybd:A, 5ybd:X
5 3zp5:A 92 80 0.4375 0.5326 0.6125 8.82e-32
6 1awc:A 110 82 0.4375 0.4455 0.5976 7.40e-30
7 4bqa:A 132 83 0.4286 0.3636 0.5783 8.44e-30
8 6da1:B 138 83 0.4286 0.3478 0.5783 2.81e-29 4bqa:D, 4bqa:G, 6da1:A, 6dat:B, 6dat:C, 6dat:D, 6dat:A, 1k78:B, 1k78:F, 1k79:A, 1k79:D, 1k7a:A, 1k7a:D, 4l0y:B, 4l0z:B, 4l18:B, 4l18:F, 4lg0:B, 1mdm:B, 3mfk:A, 3mfk:B, 2nny:A, 2nny:B, 3ri4:A, 3ri4:D, 2stt:A, 2stw:A, 3wts:C, 3wts:H, 3wtt:C, 3wtt:H, 3wtu:C, 3wtu:H, 3wtv:C, 3wtv:H, 3wtw:C, 3wtw:H, 3wtx:C, 3wtx:H, 3wty:C, 3wty:H, 3wu1:B, 5zmc:B
9 7jsa:J 88 80 0.4018 0.5114 0.5625 1.16e-28 7jsl:J, 7jsl:E, 7jsl:H, 7jsl:L
10 8bzm:H 88 88 0.4018 0.5114 0.5114 3.92e-24 8bzm:B
11 1yo5:C 88 85 0.4107 0.5227 0.5412 6.62e-23
12 3jtg:A 95 83 0.3304 0.3895 0.4458 3.30e-21
13 8e67:F 97 90 0.3214 0.3711 0.4000 1.10e-19 8e66:A, 8e66:F, 8e67:A, 8e67:I, 8e67:L, 4mhg:A
14 8eo4:F 95 92 0.3304 0.3895 0.4022 1.05e-10 8e3k:F, 8e3r:F, 8e4h:F, 8e5y:F, 8ebh:F, 8ee9:F, 8ej6:F, 8ej8:F, 8ek3:F, 8ek8:F, 8ek8:E, 8ekj:F, 8eku:F, 8ekv:F, 8ekz:F, 8em9:F, 8emd:F, 8eng:F, 8eo1:F, 8eqg:F, 8eqk:F, 8eql:F, 8evh:O, 8evi:O, 8evj:O, 1pue:E, 1pue:F, 8smh:F, 8smj:F, 8sp1:F, 8t9u:F, 8vdh:F, 8vdi:F
15 7mq8:LU 445 88 0.2321 0.0584 0.2955 0.46 7mq9:LU, 7mqa:LU
16 1f8r:A 483 63 0.1696 0.0393 0.3016 1.0 1f8r:B, 1f8r:C, 1f8r:D, 1f8s:A, 1f8s:B, 1f8s:C, 1f8s:D, 1f8s:E, 1f8s:F, 1f8s:G, 1f8s:H, 2iid:A, 2iid:B, 2iid:C, 2iid:D
17 6wug:A 312 37 0.1161 0.0417 0.3514 1.1
18 1reo:A 484 63 0.1607 0.0372 0.2857 3.1 1tdk:A, 1tdn:A, 1tdo:A
19 3kve:A 484 50 0.1339 0.0310 0.3000 3.2 3kve:B, 3kve:C, 3kve:D
20 6nfe:B 299 87 0.1875 0.0702 0.2414 3.6 6nfe:A
21 8snb:6R 72 48 0.1071 0.1667 0.2500 3.8
22 7kzv:V 1155 98 0.2321 0.0225 0.2653 4.1 8a9k:B
23 6vaa:B 1153 99 0.2411 0.0234 0.2727 4.5
24 5ts5:A 483 50 0.1339 0.0311 0.3000 4.8 4e0v:A, 4e0v:B, 5ts5:B, 5ts5:C, 5ts5:D
25 7nac:p 337 91 0.1696 0.0564 0.2088 5.8 7nad:p, 7r72:p, 7r7a:p
26 3fb4:A 215 45 0.1161 0.0605 0.2889 5.8
27 2i0o:A 287 46 0.1161 0.0453 0.2826 7.5
28 7nvw:2 390 22 0.0893 0.0256 0.4545 7.6 7nvv:2
29 3ly0:B 352 22 0.0982 0.0312 0.5000 9.2 3fdg:A, 3fdg:B, 3ly0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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