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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DRVETLVFDGAKTEARAIASDIAGSVGELAAAARTMSGVLGRGHAGQSTDRAGAINLLKANLEQHGFAFGSWFAEEPKAY
DGKDVIDNTERGGNADGAFTPYWSKDRNGNIQLSTFKADYAAEWYGLAAKSGKGAITQPYLAEGTDVPTTMTSIAYPVMS
NGRMIGVSGVDISLAALADRLSAVKPFGSGRVYLLSQSGKWLAAPIPELLMKEYDGEGVESVKDALSTGTPRMIENLTYD
GNEPFDRVVYPFSLPDVNAQWLVLVDVPR

The query sequence (length=269) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6d8v:A 269 269 1.0000 1.0000 1.0000 0.0
2 6fu4:A 297 148 0.1673 0.1515 0.3041 8.96e-13 6fu4:B, 6fu4:C, 6fu4:D
3 6f9g:D 262 238 0.2454 0.2519 0.2773 4.55e-12 6f9g:A, 6f9g:B, 6f9g:C, 6f9g:E
4 6py3:B 238 149 0.1784 0.2017 0.3221 3.16e-08 6pxy:A, 6py3:A, 6py4:A, 6py5:A, 6pyi:A, 6q0f:A, 6q0g:A
5 5ave:A 252 99 0.1301 0.1389 0.3535 4.52e-08 5avf:A, 5avf:B, 3c8c:A, 3c8c:B, 6iov:A, 6iov:B
6 5lt9:B 253 144 0.1450 0.1542 0.2708 3.87e-07 5lt9:A, 5lto:A, 5lto:B
7 7prq:B 316 233 0.1784 0.1519 0.2060 8.38e-07 7prq:A, 7prr:A, 7prr:B
8 5ltv:D 226 143 0.1413 0.1681 0.2657 1.81e-06 5ltv:A, 5ltv:B, 5ltv:E
9 5ltx:A 243 89 0.1115 0.1235 0.3371 3.51e-06 5ltx:B, 5t65:A, 5t65:B, 5t7m:A, 5t7m:B
10 7k5n:A 237 92 0.1227 0.1392 0.3587 6.62e-04
11 6w3o:B 252 97 0.1152 0.1230 0.3196 0.003 6w3o:A, 6w3p:A, 6w3p:B, 6w3r:A, 6w3r:B, 6w3s:A, 6w3s:B, 6w3t:A, 6w3t:B, 6w3v:A, 6w3v:B, 6w3x:A, 6w3x:B, 6w3y:A, 6w3y:B, 4xmr:A, 4xmr:B
12 8bmv:B 249 117 0.0929 0.1004 0.2137 0.56 8bmv:A
13 3t07:A 583 83 0.0892 0.0412 0.2892 2.5 3t07:B, 3t07:C, 3t07:D, 3t0t:A, 3t0t:B, 3t0t:C, 3t0t:D
14 8jzd:A 166 51 0.0669 0.1084 0.3529 4.2 8jzd:C
15 3bs4:A 245 39 0.0558 0.0612 0.3846 4.2
16 6x7w:A 222 114 0.1115 0.1351 0.2632 6.7 6x7w:H
17 5ha5:D 244 41 0.0632 0.0697 0.4146 7.3 5ha5:B, 5ha5:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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