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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DRTQTFIKDCLFTKCLEDPEKPFNENRFQDTLLLLPTDESADKQLEKRDYQRINKNSKIALREYINNCKKNTKKCLKLAY
ENKITDKEDLLHYIEEKHPTIYESLPQYVDFVPMYKELWINYIKELLNITKNLKTFNGSLALLKLSMADYNGALLRVTKS
KNKTLIGLQGIVIWDSQKFFIMIVKGNIIDEIKCIPKKGTVFQFEIPISDDDDSALRYSILGDRFKYRSVDRAGRKFKSR
RCDDMLYYIQN

The query sequence (length=251) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7c79:D 251 251 1.0000 1.0000 1.0000 0.0 6agb:D, 6ah3:D, 7c7a:D, 6w6v:D
2 6ahr:D 145 139 0.1873 0.3241 0.3381 9.56e-15 6ahu:D
3 5jj2:A 211 64 0.0717 0.0853 0.2812 0.79
4 9ja1:A 1286 49 0.0717 0.0140 0.3673 0.98
5 4fte:B 330 69 0.0837 0.0636 0.3043 1.1 4fsj:A, 4fsj:B, 4fsj:C, 4ftb:A, 4ftb:B, 4ftb:C, 4fte:C, 4fte:A, 4fts:C, 4fts:A, 4fts:B, 3lob:C
6 2bbv:C 321 61 0.0757 0.0592 0.3115 1.6 2bbv:A, 2bbv:B
7 2vfk:A 205 48 0.0558 0.0683 0.2917 2.2 2vfl:A
8 2koh:A 111 30 0.0398 0.0901 0.3333 3.7 9imp:A, 9imp:B, 9imp:C, 9imp:D, 9imp:E, 9imp:F, 6jue:L, 2k20:A
9 7lo5:A 1016 73 0.0797 0.0197 0.2740 4.3 7lo5:B, 7lo5:C, 7lo5:D, 7lvv:A, 7lvv:B, 7lvv:C, 7lvv:D
10 2r0q:C 193 23 0.0438 0.0570 0.4783 4.5 2r0q:D, 2r0q:E, 2r0q:F
11 3hn6:A 271 124 0.1155 0.1070 0.2339 7.5 3hn6:B, 3hn6:F, 3hn6:D, 3hn6:E
12 2wa2:B 259 58 0.0598 0.0579 0.2586 7.8
13 2wa2:A 223 58 0.0598 0.0673 0.2586 8.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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