Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DRSKWHIPIPSGKNYFSFGKILFRNTTIFLKFDGEPCDLSLNITWYLKSADCYNEIYNFKAEEVELYLEKLKEKRGLSGK
YQTSSKLFQNCSELFKTQTFSGDFMHRLPTAMHEPLQTWQDAPYIFIVHIGISSSNLFTMTVEVKGPYEYLTLEDYPLMI
FFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLA
RTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGAQTDLASLAFIPLAFLDTALCWWIFISLTQTMKL
LKLRRNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFRIVTCQSDWRELWVDDAIWRLLFSMILFVIMVLWRPSANNQR
FAFSP

The query sequence (length=405) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8hsi:A 405 405 1.0000 1.0000 1.0000 0.0 8htt:B
2 3ula:A 276 56 0.0420 0.0616 0.3036 1.7 3ula:C
3 4g8a:B 605 56 0.0420 0.0281 0.3036 1.9 4g8a:A
4 3ayv:D 244 59 0.0543 0.0902 0.3729 2.7 3ayt:A, 3ayt:B, 3ayt:C, 3ayt:D, 3ayv:A, 3ayv:B, 3ayv:C
5 8any:b 150 55 0.0346 0.0933 0.2545 4.2 7a5f:b3, 7a5g:b3, 7a5h:b, 7a5i:b3, 7a5j:b, 7a5k:b3, 5aj4:Bg, 6gaw:Bg, 6gb2:Bg, 6i9r:b, 3j7y:b, 3j9m:b, 8k2a:Lq, 8k2b:Lq, 7l08:b, 7l20:b, 7nqh:Bg, 7nql:Bg, 7nsh:Bg, 7nsi:Bg, 7nsj:Bg, 6nu2:b, 6nu3:b, 7o9k:b, 7o9m:b, 7odr:b, 7ods:b, 7odt:b, 7of0:b, 7of2:b, 7of3:b, 7of4:b, 7of5:b, 7of6:b, 7of7:b, 7og4:b, 7oi6:b, 7oi7:b, 7oi8:b, 7oi9:b, 7oia:b, 7oib:b, 7oic:b, 7oid:b, 7oie:b, 8oin:Bs, 8oiq:Bs, 8oir:Bs, 8oit:Bs, 5ool:b, 5oom:b, 7pd3:b, 8pk0:b, 7po4:b, 7qh6:b, 7qh7:b, 7qi4:b, 7qi5:b, 7qi6:b, 8qsj:b, 8qu5:b, 6vlz:b, 6vmi:b, 8xt0:Lq, 8xt1:Lq, 8xt2:Lq, 8xt3:Lq, 6ydp:Bg, 6ydw:Bg, 6zm5:b, 6zm6:b, 6zs9:b, 6zsa:b, 6zsb:b, 6zsc:b, 6zsd:b, 6zse:b, 6zsg:b
6 3kx2:B 755 35 0.0321 0.0172 0.3714 5.1 5i8q:A, 5i8q:B, 5jpt:A, 5jpt:B, 3kx2:A, 2xau:A, 2xau:B, 5y88:W
7 8a98:SC 212 56 0.0444 0.0849 0.3214 5.5 8a3w:SC, 6az1:C, 8ovj:SC, 8rxh:SC, 8rxx:SC, 5t2a:AX

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218