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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DRSEATLIKRFKGEGVRYKAKLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKTGAL
QHHHAVHEISYIAKDITDHRAFGYVCGKEGNHRFVAIKTAQAAEPVILDLRDLFQLIYELKQREELEKKAQ

The query sequence (length=151) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1ntv:A 152 150 0.9934 0.9868 1.0000 2.20e-107 1nu2:A, 1oqn:A, 1oqn:B
2 6ovf:A 154 140 0.5828 0.5714 0.6286 7.61e-67 1m7e:A, 1m7e:B, 1m7e:C, 6o5o:A, 6o5o:B, 6ovf:B
3 6itu:A 146 125 0.2715 0.2808 0.3280 1.51e-17
4 3so6:A 137 134 0.2517 0.2774 0.2836 7.77e-11
5 5njk:A 147 120 0.2583 0.2653 0.3250 6.76e-09 5njj:A, 5njj:C, 5njj:B, 5njj:D, 5njk:E, 5njk:C, 5njk:D, 5njk:B, 5njk:F
6 8ym2:A 149 130 0.2318 0.2349 0.2692 2.77e-07
7 2nmb:A 147 132 0.2185 0.2245 0.2500 8.56e-06 1ddm:A, 5yi7:A, 5yi7:C, 5yi8:A
8 1ux8:A 118 68 0.1258 0.1610 0.2794 0.19
9 5d1v:A 121 55 0.0993 0.1240 0.2727 1.3 5d1v:B
10 4re6:A 577 69 0.1391 0.0364 0.3043 1.7 2hu5:A, 2hu5:B, 2hu7:A, 2hu7:B, 2hu8:A, 2hu8:B, 4re5:A, 4re5:B, 4re6:C, 1ve7:A, 1ve7:B
11 7w9h:B 122 28 0.0861 0.1066 0.4643 1.8 7w9h:A
12 7nay:A 322 33 0.0993 0.0466 0.4545 2.8
13 1hyh:A 297 41 0.0993 0.0505 0.3659 2.9 1hyh:B, 1hyh:C, 1hyh:D
14 2bkm:A 128 63 0.1060 0.1250 0.2540 3.5 2bkm:B
15 4m1m:A 1188 86 0.1589 0.0202 0.2791 9.0 8avy:A, 6fn1:A, 3g60:A, 3g60:B, 3g61:A, 3g61:B, 5koy:A, 5koy:B, 4m1m:B, 4m2s:A, 4m2s:B, 4m2t:A, 4m2t:B, 7otg:A, 8pee:A, 6q81:A, 4q9i:A, 4q9j:A, 4q9k:A, 4q9l:A, 6qee:A, 6ujn:A, 6ujp:A, 6ujr:A, 6ujs:A, 6ujt:A, 6ujw:A, 4xwk:A, 7zk4:A, 7zk5:A, 7zk6:A, 7zk7:A, 7zk8:A, 7zk9:A, 7zka:A, 7zkb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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