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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DRPIDDIVKNLLKFVVRGFYGGSFVLVLDAILFHSVLAEDDLKQLLSINKTELGPLIARLRSDRLISIHKQREYPPNSKS
VERVYYYVKYPHAIDAIKWKVHQVVQRLKDDLDKNSEPNGYMCPICLTKYTQLEAVQLLNFDRTEFLCSLCDEPLVEDDS
GKKNKEKQDKLNRLMDQIQPIIDSLKKIDDSRIEENTFEIALARLIPPQNQSHAAYTYNPKKGSTMATLHINITTASDEV
AQRELQERQAEEKRKQNAVPEWHKQSTIGKTALGREERENEKTLNDYYAALAKKQALEDEFEDV

The query sequence (length=304) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7o4i:W 312 312 1.0000 0.9744 0.9744 0.0 8cen:W, 8ceo:W, 5fz5:W, 6gyl:W, 7ml0:W, 7ml1:W, 7ml2:W, 7ml4:W, 7o4j:W, 7o4k:W, 7o4l:W, 7o72:W, 7o73:W, 7o75:W, 7zs9:W, 7zsa:W, 7zsb:W
2 6gym:W 258 239 0.6513 0.7674 0.8285 1.98e-148 5oqj:W, 5oqm:W
3 6o9l:Q 430 313 0.2763 0.1953 0.2684 1.06e-29 8bvw:W, 8byq:W, 7eg9:U, 7ega:U, 7egb:U, 7egc:U, 7ena:EA, 7enc:EA, 5gpy:A, 8gxq:EA, 8gxs:EA, 5iy6:Q, 5iy8:Q, 5iy9:Q, 5iya:Q, 5iyb:Q, 5iyc:Q, 5iyd:Q, 7lbm:Q, 7nvr:W, 7nvs:W, 7nvt:W, 7nvu:W, 7nvy:W, 7nvz:W, 7nw0:W, 8s51:W, 8s52:W, 8s54:W, 8s55:W, 8s5n:W, 1vd4:A, 8wak:U, 8wal:U, 8wan:U, 8wao:U, 8wap:U, 8waq:U, 8war:U, 8was:U
4 7ena:2 385 26 0.0428 0.0338 0.5000 2.1 8bvw:4, 8byq:4, 8ebs:E, 8ebt:E, 8ebu:E, 8ebv:E, 8ebw:E, 8ebx:E, 8eby:E, 7egb:2, 7egc:2, 7enc:2, 8gxq:HG, 8gxs:HG, 7lbm:a, 7nvr:6, 7nvw:6, 7nvx:6, 7nvy:6, 7nvz:6, 7nw0:6, 6o9l:6, 6o9m:6, 8wak:2, 8wal:2, 8wan:2, 8wao:2, 8wap:2, 8waq:2, 8war:2, 8was:2, 1z60:A
5 6le7:A 381 50 0.0592 0.0472 0.3600 2.9 6le8:A
6 7n29:B 350 132 0.1118 0.0971 0.2576 4.8 7n29:A, 7n29:C, 7n29:D, 7r4j:A, 7r4k:A, 7r4l:A, 7r4m:A
7 8jif:R 256 54 0.0461 0.0547 0.2593 5.2 2znc:A, 3znc:A
8 7l6x:A 256 53 0.0625 0.0742 0.3585 5.8 6bqd:A, 6bqd:B, 6df4:A, 6df7:A, 6df7:B, 6fic:T, 5i1q:A, 5i29:A, 7jjg:A, 7jsp:A, 7jtc:A, 7k03:A, 7k0d:A, 7k0u:A, 7k0u:B, 7k1p:A, 7k27:A, 7lb0:A, 7lb1:A, 7lb2:A, 7lb3:A, 5mg2:A, 7n42:A, 6p38:A, 6p39:A, 6p3a:A, 6p3a:B, 7p4s:A, 7t2i:A, 7t36:A, 4yym:A, 4yym:B, 4yyn:A, 4yyn:B
9 1llm:C 87 67 0.0493 0.1724 0.2239 8.7 1llm:D
10 7dvq:9 409 67 0.0691 0.0513 0.3134 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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