Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DRLDAALRFQQEALNLRAQRQEILAANIANADTPGYQARDIDFASELKKVMVRGRAVDLLYRVPDQPSLDGNTVDMDRER
TQFADNSLKYQMGLTVLGSQLKGMMNVLQG

The query sequence (length=110) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8wk3:Q 119 119 1.0000 0.9244 0.9244 7.95e-74 7cg0:k, 7cg0:n, 7cg0:o, 7cgo:k, 7cgo:n, 7cgo:o, 7e80:k, 7e80:n, 7e80:o, 7e82:k, 7e82:n, 7e82:o, 8wk3:R, 8wk3:S, 8wk3:T, 8wkk:Q, 8wkk:R, 8wkk:S, 8wkk:T, 8wlh:Q, 8wlh:R, 8wlh:S, 8wlh:T, 8wlq:Q, 8wlq:R, 8wlq:S, 8wlq:T
2 8wkq:Q 134 134 1.0000 0.8209 0.8209 5.85e-72 8wkq:R, 8wkq:S, 8wkq:T, 8wkq:U, 8wl2:A6, 8wl2:A7, 8wl2:A8, 8wl2:A9, 8wl2:A0, 8wln:Q, 8wln:R, 8wln:S, 8wln:T, 8wln:U, 8wlt:A6, 8wlt:A7, 8wlt:A8, 8wlt:A9, 8wlt:A0, 8wo5:A6, 8wo5:A7, 8wo5:A8, 8wo5:A9, 8wo5:A0, 8woe:A6, 8woe:A7, 8woe:A8, 8woe:A9, 8woe:A0
3 7cg0:m 106 109 0.9636 1.0000 0.9725 2.19e-71 7cg0:l, 7cgo:m, 7cgo:l, 7e80:m, 7e80:l, 7e82:m, 7e82:l, 8wk3:U, 8wkk:U, 8wlh:U, 8wlq:U
4 3t3o:A 553 34 0.1273 0.0253 0.4118 0.30 3bk1:A, 3bk2:A, 3t3n:A
5 8wk3:o 250 37 0.1182 0.0520 0.3514 0.71 7cgo:b, 7cgo:e, 7cgo:a, 7cgo:c, 7cgo:d, 7e80:b, 7e80:e, 7e80:a, 7e80:c, 7e80:d, 7e82:b, 7e82:e, 7e82:a, 7e82:c, 7e82:d, 8wk3:m, 8wk3:n, 8wk3:p, 8wk3:q, 8wkk:m, 8wkk:n, 8wkk:o, 8wkk:p, 8wkk:q, 8wl2:AA, 8wl2:AB, 8wl2:AC, 8wl2:AD, 8wl2:AE, 8wlh:m, 8wlh:n, 8wlh:o, 8wlh:q, 8wlq:m, 8wlq:n, 8wlq:o, 8wlq:q, 8wlt:AA, 8wlt:AB, 8wlt:AC, 8wlt:AE, 8wo5:AA, 8wo5:AB, 8wo5:AC, 8wo5:AE, 8woe:AA, 8woe:AB, 8woe:AC, 8woe:AD, 8woe:AE
6 8wk3:V 133 117 0.3000 0.2481 0.2821 2.0 7cg0:h, 7cg0:f, 7cg0:i, 7cg0:j, 7cg0:p, 7cgo:h, 7cgo:f, 7cgo:i, 7cgo:j, 7cgo:p, 7e80:h, 7e80:f, 7e80:i, 7e80:j, 7e80:p, 7e82:h, 7e82:f, 7e82:i, 7e82:j, 7e82:p, 8wk3:W, 8wk3:X, 8wk3:Y, 8wk3:Z, 8wk3:a, 8wkk:V, 8wkk:a, 8wkk:W, 8wkk:X, 8wkk:Y, 8wkk:Z, 8wkq:V, 8wkq:a, 8wkq:W, 8wkq:X, 8wkq:Y, 8wkq:Z, 8wl2:BA, 8wl2:BF, 8wl2:BB, 8wl2:BC, 8wl2:BD, 8wl2:BE, 8wlh:V, 8wlh:a, 8wlh:W, 8wlh:X, 8wlh:Y, 8wlh:Z, 8wln:V, 8wln:a, 8wln:W, 8wln:X, 8wln:Y, 8wln:Z, 8wlq:V, 8wlq:a, 8wlq:W, 8wlq:X, 8wlq:Y, 8wlq:Z, 8wlt:BA, 8wlt:BF, 8wlt:BB, 8wlt:BC, 8wlt:BD, 8wlt:BE, 8wo5:BA, 8wo5:BF, 8wo5:BB, 8wo5:BC, 8wo5:BD, 8wo5:BE, 8woe:BA, 8woe:BF, 8woe:BB, 8woe:BC, 8woe:BD, 8woe:BE
7 4fxq:A 445 47 0.1818 0.0449 0.4255 2.1 4fk7:A, 4fxq:B
8 3bnk:B 187 30 0.0909 0.0535 0.3333 4.9 3bnk:A
9 2e7i:A 344 90 0.2273 0.0727 0.2778 6.4 2e7i:B, 2e7j:A, 2e7j:B
10 5a0t:A 454 53 0.1364 0.0330 0.2830 6.5 5a0t:B, 5a0v:A, 5a0v:B
11 2zc0:A 405 35 0.0909 0.0247 0.2857 9.1 2zc0:B, 2zc0:C, 2zc0:D

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218