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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DRLDAALRFQQEALNLRAQRQEILAANIANADTPGYQARDIDFASELKKVMVAVDLLYRVPDQPSLDGNTVDMDRERTQF
ADNSLKYQMGLTVLGSQLKGMMNVLQ

The query sequence (length=106) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7cg0:m 106 106 1.0000 1.0000 1.0000 8.46e-74 7cg0:l, 7cgo:m, 7cgo:l, 7e80:m, 7e80:l, 7e82:m, 7e82:l, 8wk3:U, 8wkk:U, 8wlh:U, 8wlq:U
2 8wk3:Q 119 118 1.0000 0.8908 0.8983 3.68e-70 7cg0:k, 7cg0:n, 7cg0:o, 7cgo:k, 7cgo:n, 7cgo:o, 7e80:k, 7e80:n, 7e80:o, 7e82:k, 7e82:n, 7e82:o, 8wk3:R, 8wk3:S, 8wk3:T, 8wkk:Q, 8wkk:R, 8wkk:S, 8wkk:T, 8wlh:Q, 8wlh:R, 8wlh:S, 8wlh:T, 8wlq:Q, 8wlq:R, 8wlq:S, 8wlq:T
3 8wkq:Q 134 133 1.0000 0.7910 0.7970 2.79e-68 8wkq:R, 8wkq:S, 8wkq:T, 8wkq:U, 8wl2:A6, 8wl2:A7, 8wl2:A8, 8wl2:A9, 8wl2:A0, 8wln:Q, 8wln:R, 8wln:S, 8wln:T, 8wln:U, 8wlt:A6, 8wlt:A7, 8wlt:A8, 8wlt:A9, 8wlt:A0, 8wo5:A6, 8wo5:A7, 8wo5:A8, 8wo5:A9, 8wo5:A0, 8woe:A6, 8woe:A7, 8woe:A8, 8woe:A9, 8woe:A0
4 5a9y:A 562 64 0.2075 0.0391 0.3438 0.29 5a9x:A
5 3t3o:A 553 29 0.1038 0.0199 0.3793 0.62 3bk1:A, 3bk2:A, 3t3n:A
6 8wk3:o 250 37 0.1226 0.0520 0.3514 0.76 7cgo:b, 7cgo:e, 7cgo:a, 7cgo:c, 7cgo:d, 7e80:b, 7e80:e, 7e80:a, 7e80:c, 7e80:d, 7e82:b, 7e82:e, 7e82:a, 7e82:c, 7e82:d, 8wk3:m, 8wk3:n, 8wk3:p, 8wk3:q, 8wkk:m, 8wkk:n, 8wkk:o, 8wkk:p, 8wkk:q, 8wl2:AA, 8wl2:AB, 8wl2:AC, 8wl2:AD, 8wl2:AE, 8wlh:m, 8wlh:n, 8wlh:o, 8wlh:q, 8wlq:m, 8wlq:n, 8wlq:o, 8wlq:q, 8wlt:AA, 8wlt:AB, 8wlt:AC, 8wlt:AE, 8wo5:AA, 8wo5:AB, 8wo5:AC, 8wo5:AE, 8woe:AA, 8woe:AB, 8woe:AC, 8woe:AD, 8woe:AE
7 5xxm:A 749 68 0.2358 0.0334 0.3676 2.6 5xxl:A, 5xxl:B, 5xxm:B, 5xxn:A, 5xxn:B, 5xxo:B, 5xxo:A
8 3gtg:C 271 57 0.1509 0.0590 0.2807 3.4 4a3b:C, 4a3c:C, 4a3d:C, 4a3e:C, 4a3f:C, 4a3g:C, 4a3i:C, 4a3j:C, 4a3k:C, 4a3l:C, 4a3m:C, 4a93:C, 2b63:C, 2b8k:C, 4bbr:C, 4bbs:C, 6blo:C, 6blp:C, 6bm2:C, 6bm4:C, 6bqf:C, 4bxx:C, 4bxz:C, 4by1:C, 4by7:C, 5c3e:C, 5c4a:C, 5c4j:C, 5c4x:C, 8cen:C, 8ceo:C, 3cqz:C, 2e2h:C, 2e2i:C, 2e2j:C, 3fki:C, 5fmf:C, 5fyw:C, 5fz5:C, 3gtj:C, 3gtk:C, 3gtl:C, 3gtm:C, 3gto:C, 3gtp:C, 3gtq:C, 6gyk:C, 6gyl:C, 6gym:C, 3h3v:D, 3hou:C, 3hou:O, 3hov:C, 3how:C, 3hox:C, 3hoy:C, 3hoz:C, 1i3q:C, 3i4m:C, 3i4n:C, 1i50:C, 1i6h:C, 6i84:C, 5ip7:C, 5ip9:C, 3j0k:C, 2ja5:C, 2ja6:C, 2ja7:C, 2ja7:O, 2ja8:C, 9ja1:C, 8jch:C, 3k1f:C, 8k5p:C, 3k7a:C, 1k83:C, 7ked:C, 7kee:C, 7kef:C, 3m3y:C, 3m4o:C, 7mei:c, 7mei:C, 7mk9:C, 7mka:c, 7ml0:C, 7ml1:C, 7ml2:C, 7ml4:C, 1nik:C, 7nkx:C, 2nvq:C, 2nvt:C, 2nvx:C, 2nvy:C, 2nvz:C, 7o4i:C, 7o4j:C, 6o6c:C, 7o72:C, 7o73:C, 7o75:C, 5oqj:C, 5oqm:C, 5ot2:C, 3po2:C, 3po3:C, 3qt1:C, 1r5u:C, 2r7z:C, 1r9s:C, 1r9t:C, 2r92:C, 2r93:C, 7rim:C, 7rip:C, 7riq:C, 7riw:C, 7rix:C, 7riy:C, 3rzd:C, 3rzo:C, 3s14:C, 3s15:C, 3s16:C, 3s17:C, 3s1m:C, 3s1n:C, 3s1q:C, 3s1r:C, 3s2d:C, 3s2h:C, 1sfo:C, 5sva:C, 8tug:C, 8tvp:C, 8tvq:C, 8tvs:C, 8tvv:C, 8tvw:C, 8tvx:C, 8tvy:C, 1twa:C, 1twc:C, 1twf:C, 1twg:C, 1twh:C, 5u5q:C, 8u9r:C, 8u9x:C, 8ukq:C, 8ukr:C, 8uks:C, 8ukt:C, 8uku:C, 6upx:C, 6upy:C, 6upz:C, 6uq0:C, 6uq1:C, 6uq2:C, 6uq3:C, 4v1m:C, 4v1n:C, 4v1o:C, 2vum:C, 5vvr:C, 5vvs:C, 5w4u:C, 5w51:C, 1wcm:C, 4x67:C, 4x6a:C, 1y1v:C, 1y1w:C, 4y52:C, 1y77:C, 4y7n:C, 2yu9:C, 7zs9:C, 7zsa:C, 7zsb:C
9 4u3w:A 485 42 0.1226 0.0268 0.3095 3.8 4u3w:B
10 3bnk:B 187 30 0.0943 0.0535 0.3333 5.3 3bnk:A
11 4gby:A 475 51 0.1604 0.0358 0.3333 8.1 4gbz:A, 4gc0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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