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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVA
ILLFKSG

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4d07:A 92 87 1.0000 0.9457 1.0000 7.48e-63 3brl:A, 1cmi:A, 1cmi:B, 7cnu:A, 7d35:A, 3dvp:A, 3dvp:B, 5e0l:A, 5e0m:A, 3e2b:A, 1f95:A, 1f95:B, 1f96:A, 1f96:B, 3fm7:E, 3fm7:F, 3glw:A, 6gzj:A, 6gzl:A, 7k3j:A, 7k3j:G, 7k3j:I, 7k3j:K, 7k3j:C, 7k3j:E, 7k3k:A, 7k3l:A, 2p2t:A, 2pg1:A, 2pg1:B, 2pg1:C, 2pg1:D, 4qh7:A, 4qh7:B, 4qh7:E, 4qh7:F, 4qh8:A, 4qh8:B, 2xqq:A, 2xqq:C, 2xqq:B, 2xqq:D, 7y8w:A, 7y8w:B, 7y8w:D, 7y8w:C, 7y8w:G, 7y8w:H, 7y8w:J, 7y8w:I, 7y8w:M, 7y8w:N, 7y8w:Q, 7y8w:R, 3zke:A, 3zke:C, 3zke:E, 3zke:G, 3zke:I, 3zke:K, 3zkf:A, 3zkf:C, 3zkf:E, 3zkf:K, 3zkf:G, 3zkf:I
2 4ds1:A 86 83 0.4598 0.4651 0.4819 5.42e-30 4ds1:C, 4ht6:A, 4ht6:C, 4ht6:E
3 8df9:A 781 35 0.1264 0.0141 0.3143 0.14
4 8df7:A 850 35 0.1264 0.0129 0.3143 0.14 8df7:B, 8df8:A, 8df8:B, 8df9:B, 8dfb:A, 8dfb:B, 4gfj:A, 3m6k:B, 3m6z:A, 3m6z:B
5 2v4j:B 380 38 0.1494 0.0342 0.3421 0.16 2v4j:E
6 7pub:Cr 267 18 0.1149 0.0375 0.5556 2.0 6hiv:Cr, 6hiw:Cr, 6hiy:Cr
7 7w3u:A 343 48 0.1954 0.0496 0.3542 3.2 7w3r:A, 7w3u:B, 7w3u:C
8 8h0m:A 392 40 0.1609 0.0357 0.3500 3.9 8gqr:A, 8gqr:B
9 2yi9:A 771 45 0.1264 0.0143 0.2444 5.1 2yi9:B, 2yi9:C, 2yi9:D, 2yi9:E, 3zed:A, 3zed:B, 3zed:C
10 8swu:A 269 37 0.1724 0.0558 0.4054 5.6 8swu:B, 8swu:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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