Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLK
VYLQKYRE

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6r2v:B 93 88 0.9432 0.8925 0.9432 2.93e-60 7cvo:B, 7cvq:B, 7cvq:G, 7cvq:L, 7cvq:Q
2 7c9o:B 85 84 0.8636 0.8941 0.9048 8.10e-54
3 7aw7:B 92 88 0.7614 0.7283 0.7614 6.62e-48 7aw9:B, 4g91:B, 4g92:B, 6y35:B, 6y36:B, 6y37:B, 6y39:B, 6y39:E, 6y39:H
4 4awl:B 92 88 0.7386 0.7065 0.7386 7.91e-47 7ah8:A, 7ah8:C, 6qmp:B, 6qmq:B, 6qms:B, 8qu2:B, 8qu3:B, 8qu4:B
5 1jfi:B 135 87 0.3409 0.2222 0.3448 3.79e-16
6 4wzs:B 113 74 0.2955 0.2301 0.3514 1.60e-09
7 1a7w:A 68 64 0.2500 0.3235 0.3438 6.61e-04 5t5k:A, 5t5k:B, 5t5k:C, 5t5k:D, 5t5k:E, 5t5k:F
8 8epm:A 991 47 0.1364 0.0121 0.2553 0.082
9 7xlq:A 1319 47 0.1364 0.0091 0.2553 0.082 8epl:A, 7yg5:A
10 6qmq:C 84 74 0.2500 0.2619 0.2973 0.10 7ah8:B, 7ah8:D, 4awl:C, 6qmp:C, 6qms:C, 8qu2:C, 8qu3:C, 8qu4:C
11 7aw9:C 118 73 0.2273 0.1695 0.2740 0.48 7aw7:C, 4g91:C, 4g92:C, 6y35:C, 6y36:C, 6y37:C, 6y39:C, 6y39:F, 6y39:I
12 6en3:A 934 68 0.2273 0.0214 0.2941 1.5 8a49:C, 4nuy:A, 4nuz:A
13 4m54:A 310 26 0.1250 0.0355 0.4231 2.8
14 7vfs:A 1266 47 0.1250 0.0087 0.2340 2.9 7vfu:A, 7vfv:A, 7vfw:A
15 7mix:A 1326 47 0.1250 0.0083 0.2340 3.0 7miy:A
16 2x6b:A 287 63 0.1705 0.0523 0.2381 4.8 7n9k:A, 7n9l:A, 6o9t:A, 6o9u:A, 6o9v:A, 6o9v:B, 2x6a:A, 2x6c:A
17 6px9:B 207 52 0.1591 0.0676 0.2692 4.9
18 4mp6:A 334 25 0.1250 0.0329 0.4400 6.0 4mp8:A, 4mpd:A
19 8e59:A 1230 52 0.1705 0.0122 0.2885 6.0 8e5a:A, 8e5b:A, 7uhf:A, 7uhg:A
20 8x90:A 1377 47 0.1250 0.0080 0.2340 6.6 8x91:A, 8x93:A
21 1oij:C 238 42 0.1136 0.0420 0.2381 7.2 1oii:C, 1oij:D
22 1vz4:D 259 42 0.1136 0.0386 0.2381 7.7 1oii:A, 1oii:B, 1oii:D, 1oij:A, 1oij:B, 1oik:A, 1oik:D, 1vz4:A
23 5coc:A 124 55 0.2045 0.1452 0.3273 8.2
24 1qr0:A 228 47 0.1477 0.0570 0.2766 9.6 4mrt:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218