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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DREKLLTESGVYGTFATFQMDHDWWDLPGESRVISVAEVKGLVEQWSGKILVESYLLRGLSDHADLMFRVHARTLSDTQQ
FLSAFMGTRLGRHLTSGGLLHGVSKKPTYVAGFPESMKTELQVNGESGSRPYAIVIPIKKDAEWWALDQEARTALMQEHT
QAALPYLKTVKEKLYHSTGLDDVDFITYFETERLEDFHNLVRALQQVKEFRHNRRFGHPTLLGTMSPLDEILEKFAQ

The query sequence (length=237) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4m05:B 240 237 1.0000 0.9875 1.0000 8.11e-179 4m05:A, 4m05:C, 4m05:D, 4m05:E, 4m06:A, 4m06:B, 4m06:C, 4m06:D, 4m06:E, 4m07:A, 4m07:B, 4m07:C, 4m07:D, 4m07:E, 4m08:A, 4m08:B, 4m08:C, 4m08:D, 4m08:E, 4m09:A, 4m09:B, 4m09:C, 4m09:D, 4m09:E, 3nn1:A, 3nn1:B, 3nn1:C, 3nn1:D, 3nn1:E, 3nn2:A, 3nn2:B, 3nn2:C, 3nn2:D, 3nn2:E, 3nn3:A, 3nn3:B, 3nn3:C, 3nn3:D, 3nn3:E, 3nn4:A, 3nn4:B, 3nn4:C, 3nn4:D, 3nn4:E
2 3q08:A 241 238 0.4177 0.4108 0.4160 5.92e-59 3q08:B, 3q08:C, 3q08:D, 3q08:E, 3q08:F, 3q08:G, 3q08:H, 3q08:I, 3q08:J, 3q08:K, 3q08:L, 3q08:M, 3q08:N, 3q08:O, 3q08:P, 3q08:Q, 3q08:R, 3q08:S, 3q08:T, 3q09:A, 3q09:B, 3q09:C, 3q09:D, 3q09:E, 3q09:F, 3q09:G, 3q09:H, 3q09:I, 3q09:J, 3q09:K, 3q09:L, 3q09:M, 3q09:N, 3q09:O, 3q09:P, 3q09:Q, 3q09:R, 3q09:S, 3q09:T, 2vxh:A, 2vxh:B, 2vxh:C, 2vxh:D, 2vxh:E, 2vxh:F
3 5a13:B 245 238 0.4135 0.4000 0.4118 1.68e-55 5a12:A, 5a12:B, 5a12:C, 5a12:D, 5a12:E, 5a13:A, 5a13:C, 5a13:D, 5a13:E, 5a13:F, 5a13:G, 5a13:H, 5a13:I, 5a13:J
4 3qpi:A 173 128 0.1646 0.2254 0.3047 3.78e-11 3qpi:B
5 7ati:A 182 89 0.1308 0.1703 0.3483 8.78e-09 7asb:A, 7asb:B, 7ati:B, 5k8z:A, 5k8z:B, 5k8z:C, 5k8z:D, 5k90:A, 5k90:B, 5k90:C, 5k90:D, 5k91:A, 5k91:B, 5k91:C, 5k91:D, 5mau:A, 5mau:B, 5nku:A, 5nku:B, 5nkv:A, 5nkv:B, 7ou5:A, 7ou5:B, 7ou7:A, 7ou7:B, 7ou9:A, 7ou9:B, 7oua:A, 7oua:B, 7ouy:A, 7ouy:B, 7ouy:C, 7ouy:D, 7owi:A, 7owi:B, 7owi:C, 7owi:D, 8quu:A, 8quu:B, 8quv:A, 8quv:B, 8quz:A, 8quz:B, 8qvb:A, 8qvb:B
6 5t2k:B 243 229 0.2405 0.2346 0.2489 1.23e-06 5t2k:A, 5t2k:C, 5t2k:D, 5t2k:E
7 7q4g:C 231 209 0.1983 0.2035 0.2249 0.002 7q4f:A, 7q4f:B, 7q4f:C, 7q4f:D, 7q4f:E, 7q4g:A, 7q4g:B, 7q4g:D, 7q4g:E, 6xub:A, 6xub:B, 6xub:C, 6xub:D, 6xub:E, 6xuc:A, 6xuc:B, 6xuc:C, 6xuc:D, 6xuc:E
8 7pkt:c 318 45 0.0717 0.0535 0.3778 0.60
9 6fxj:A 251 60 0.0759 0.0717 0.3000 1.7 6fxj:B, 6fxj:C, 6fxj:D, 6fxj:E, 6fxq:A, 6fxq:B, 6fxq:C, 6fxq:D, 6fxq:E, 5loq:A, 5loq:B, 5loq:C, 5loq:D, 5loq:E
10 2bov:A 173 51 0.0717 0.0983 0.3333 1.9 2a78:A, 2a9k:A, 8fjh:B, 8fji:B, 6p0i:B, 6p0j:B, 6p0k:B, 6p0l:B, 6p0m:B, 6p0n:B, 6p0o:B, 1u8y:A, 1u8y:B, 1u8z:A, 1u8z:B, 1u90:A, 1u90:B, 1uad:A, 1uad:B, 1zc3:A, 1zc3:C, 1zc4:A, 1zc4:C
11 4c1n:A 442 64 0.0844 0.0452 0.3125 2.4 4c1n:C, 4c1n:E, 4c1n:G, 2h9a:A, 2ycl:A
12 3k31:A 262 55 0.0802 0.0725 0.3455 2.6
13 8wm7:D 257 69 0.0802 0.0739 0.2754 4.8 8w9m:D
14 7q2x:D 994 143 0.1350 0.0322 0.2238 8.4 7q2y:D
15 4s2r:P 615 45 0.0717 0.0276 0.3778 9.7 4s2r:Q, 4s2t:P, 4s2t:Q

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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