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BioLiP
>protein
DREEAAFLAASILIQHAHEQGKDDRELEKILEIAIRILEKNGVDREEAAFLAASILIQHAHEQGKDDRELEKILEIAIRI
LEKNGVDREEAAFLAASILIQHAHEQGKDDRELEKILEIAIRILEKNGVDREEAAFLAASILIQHAHEQGKDDRELEKIL
EIAIRILEKNGV

The query sequence (length=172) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7udk:A 172 172 1.0000 1.0000 1.0000 2.24e-112
2 6cd1:A 452 60 0.1047 0.0398 0.3000 2.7 6ccz:A, 6ccz:B, 6cd1:B, 6cd1:C, 6cd1:D, 6cd1:E, 6cd1:F, 6cd1:G, 6cd1:H
3 6cd1:A 452 60 0.1047 0.0398 0.3000 2.7 6ccz:A, 6ccz:B, 6cd1:B, 6cd1:C, 6cd1:D, 6cd1:E, 6cd1:F, 6cd1:G, 6cd1:H
4 6cd1:A 452 60 0.1047 0.0398 0.3000 2.7 6ccz:A, 6ccz:B, 6cd1:B, 6cd1:C, 6cd1:D, 6cd1:E, 6cd1:F, 6cd1:G, 6cd1:H
5 8urw:C 1080 54 0.1047 0.0167 0.3333 2.8 8syi:C
6 8urw:C 1080 54 0.1047 0.0167 0.3333 2.8 8syi:C
7 8urw:C 1080 54 0.1047 0.0167 0.3333 2.8 8syi:C
8 8h3v:A 1077 54 0.1047 0.0167 0.3333 9.2 8h40:A
9 8h3v:A 1077 54 0.1047 0.0167 0.3333 9.2 8h40:A
10 8h3v:A 1077 54 0.1047 0.0167 0.3333 9.2 8h40:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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