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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DQPTQTVSYPQLIDLLRRIFVVHGTSPEVADVLAENCASAQRDGSHSHGIFRIPGYLSSLASGWVDGKAVPVVEDVGAAF
VRVDACNGFAQPALAAARSLLIDKARSAGVAILAIRGSHHFAALWPDVEPFAEQGLVALSMVNSMTCVVPHGARQPLFGT
NPIAFGAPRAGGEPIVFDLATSAIAHGDVQIAAREGRLLPAGMGVDRDGLPTQEPRAILDGGALLPFGGHKGSALSMMVE
LLAAGLTGGNFSFEFDWSKHPGAQTPWTGQLLIVIDPDKGAGQHFAQRSEELVRQLHGVGQERLPGDRRYLERARSMAHG
IVIAQADLERLQELAGH

The query sequence (length=337) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2cwf:B 337 337 1.0000 1.0000 1.0000 0.0 2cwf:A, 2cwh:A, 2cwh:B
2 2x06:A 344 288 0.2641 0.2587 0.3090 2.45e-36 2x06:B, 2x06:C, 2x06:D, 2x06:E, 2x06:F, 2x06:G, 2x06:H
3 1vbi:A 340 323 0.3234 0.3206 0.3375 2.38e-34
4 4fju:A 338 328 0.3056 0.3047 0.3140 3.33e-33 4fju:B, 4h8a:A, 4h8a:B
5 2g8y:A 359 272 0.2611 0.2451 0.3235 6.35e-33 2g8y:B
6 1v9n:A 348 349 0.2908 0.2816 0.2808 1.32e-31
7 1z2i:A 350 274 0.2582 0.2486 0.3175 1.95e-27 1z2i:B, 1z2i:C, 1z2i:D
8 1s20:G 335 341 0.2700 0.2716 0.2669 2.58e-26 1s20:A, 1s20:B, 1s20:C, 1s20:D, 1s20:E, 1s20:F, 1s20:H
9 3i0p:A 361 322 0.2433 0.2271 0.2547 5.15e-25
10 4v7r:AM 106 44 0.0415 0.1321 0.3182 1.7 4v7r:CM
11 2fts:A 419 92 0.0801 0.0644 0.2935 2.2 5err:A, 5ers:A, 5ert:A, 5eru:A, 5erv:A, 6fgc:A, 6fgd:A, 6hsn:A, 6hso:A, 4pd1:A, 1t3e:B, 4tk1:A, 4tk1:B, 4tk2:B, 4tk2:A, 4tk3:B, 4tk3:A, 4tk4:B, 4tk4:A, 4u90:A, 4u91:A
12 3szv:A 364 165 0.1187 0.1099 0.2424 2.7 2y0k:A
13 3ui2:A 234 72 0.0593 0.0855 0.2778 6.0 3dep:A, 2hug:A
14 6gbn:B 435 67 0.0564 0.0437 0.2836 6.5 6gbn:A, 6gbn:C, 6gbn:D
15 8hkb:A 302 41 0.0504 0.0563 0.4146 6.7 8hka:A
16 8qf8:A 776 121 0.0890 0.0387 0.2479 8.1 5opj:A, 8qf8:B, 6yqh:AAA
17 6dju:F 531 108 0.0831 0.0527 0.2593 8.2 6w6g:F
18 6w6i:F 605 108 0.0831 0.0463 0.2593 8.4 6w6j:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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