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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DQLAKLSYEKTLRNLATQTQNSSKQDKVQKDTKTGKITIADDDKLVNKLAVSLQSESKKRYEARKRQMQNAKTLYGVESF
INDKNKQFNEKLSRES

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5gm6:f 102 96 1.0000 0.9412 1.0000 3.45e-64 6bk8:R, 5gmk:I, 6j6g:I, 6j6h:I, 6j6n:I, 6j6q:I, 5wsg:I, 5y88:K, 5ylz:K
2 7b9v:y 134 96 0.8229 0.5896 0.8229 1.81e-44 6exn:y, 5mps:y, 5mq0:y
3 8ouo:B 625 61 0.1875 0.0288 0.2951 0.80 6nq0:A, 6nq0:B, 6nq2:A, 6nq2:B
4 8ouo:A 648 61 0.1875 0.0278 0.2951 0.81
5 8i0u:R 380 33 0.1458 0.0368 0.4242 5.9 8c6j:K, 8i0s:R, 8i0t:R, 8i0v:R, 8i0w:R, 6icz:R, 6id0:R, 6id1:R, 5mqf:C, 6qdv:K, 7w59:R, 7w5a:R, 7w5b:R, 5xjc:R, 5yzg:R, 6zym:C
6 9fmd:R 328 33 0.1458 0.0427 0.4242 7.1 8ro2:R

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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