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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DPVYVDIDADSAFLKALQRAYPMFEVEPRQVTPNDAANARAFSHLAIKLIEQEIDPDSTILDIGSAPARRMMSDRKYHCV
CPMRSAEDPERLANYARKLASAAGKVLDRNISGKIGDLQAVMAVPDTETPTFCLHTDVSCRQRADVAIYQDVYAVHAPTS
LYHQAIKGVRLAYWVGFDTTPFMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLTEGRRGKLSIMRGKKLEPCDRVLF
SVGSTLYPESRKLLKSWHLPSVFHLKGKLSFTCRCDTVVSCEGYVVKRITMSPGLYGKTTGYAVTHHADGFLMCKTTDTV
DGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGLNQRTNTMKNYMIPVVAQAFSKWAKECRKDMEDEKLLGVR
ERTWAFKKQKTHTVYKRPDTQSIQKVQAEFDSFVWSSGLSIPLRTRIKWLLSK

The query sequence (length=453) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7y38:A 471 469 1.0000 0.9618 0.9659 0.0 8aov:A, 8aov:C, 8aov:E, 8aov:G, 8aov:I, 8aov:K, 8aov:M, 8aov:O, 8aov:Q, 8aov:S, 8aov:V, 8aov:X, 8aow:A, 8aow:C, 8aow:E, 8aow:G, 8aow:I, 8aow:K, 8aow:M, 8aow:O, 8aow:Q, 8aow:S, 8aow:V, 8aow:X, 8aox:JA, 8aox:A, 8aox:C, 8aox:E, 8aox:G, 8aox:I, 8aox:K, 8aox:M, 8aox:O, 8aox:Q, 8aox:S, 8aox:V, 8aox:X, 8aox:Z, 8aox:BA, 8aox:DA, 8aox:FA, 8aox:HA, 8aox:LA, 8aox:NA, 8aox:PA, 8aox:RA, 8aox:TA, 8aox:VA, 8apx:A, 8apx:B, 8apx:C, 8apx:D, 8apx:E, 8apx:F, 8apx:G, 8apx:H, 8apx:I, 8apx:J, 8apx:K, 8apx:L, 8axv:A, 8axv:B, 8axv:C, 8axv:D, 8axv:E, 8axv:F, 8axv:G, 8axv:H, 8axv:I, 8axv:J, 8axv:K, 8axv:L, 7dop:A, 7dop:B, 7dop:C, 7dop:D, 7dop:E, 7dop:F, 7dop:G, 7dop:H, 7dop:I, 7dop:J, 7dop:K, 7dop:L, 7fgg:A, 7fgg:B, 7fgg:C, 7fgg:D, 7fgg:E, 7fgg:F, 7fgg:G, 7fgg:H, 7fgg:I, 7fgg:J, 7fgg:K, 7fgg:L, 7fgh:A, 7fgh:B, 7fgh:C, 7fgh:D, 7fgh:E, 7fgh:F, 7fgh:G, 7fgh:H, 7fgh:I, 7fgh:J, 7fgh:K, 7fgh:L, 8jce:A, 8jce:B, 8jce:C, 8jce:D, 8jce:E, 8jce:F, 8jce:G, 8jce:H, 8jce:I, 8jce:J, 8jce:K, 8jce:L, 7x01:A, 7x01:B, 7x01:C, 7x01:D, 7x01:E, 7x01:F, 7x01:G, 7x01:H, 7x01:I, 7x01:J, 7x01:K, 7x01:L, 7y38:B, 7y38:C, 7y38:D, 7y38:E, 7y38:F, 7y38:G, 7y38:H, 7y38:I, 7y38:J, 7y38:K, 7y38:L, 6z0u:A, 6z0u:C, 6z0u:E, 6z0u:G, 6z0u:I, 6z0u:K, 6z0u:M, 6z0u:O, 6z0u:Q, 6z0u:S, 6z0u:V, 6z0u:X, 6z0u:Z, 6z0u:BA, 6z0u:DA, 6z0u:FA, 6z0u:HA, 6z0u:JA, 6z0u:LA, 6z0u:NA, 6z0u:PA, 6z0u:RA, 6z0u:TA, 6z0u:VA, 6z0v:A, 6z0v:C, 6z0v:E, 6z0v:G, 6z0v:I, 6z0v:K, 6z0v:M, 6z0v:O, 6z0v:Q, 6z0v:S, 6z0v:V, 6z0v:X
2 7fgi:A 437 452 0.9647 1.0000 0.9668 0.0 7fgi:B, 7fgi:C, 7fgi:D, 7fgi:E, 7fgi:F, 7fgi:G, 7fgi:H, 7fgi:I, 7fgi:J, 7fgi:K, 7fgi:L
3 3b7r:L 610 131 0.0684 0.0508 0.2366 0.41 5aen:A, 7auz:A, 7av0:A, 7av1:A, 7av2:A, 8ava:A, 8awh:A, 3b7s:A, 3b7t:A, 3b7u:X, 5bpp:A, 3cho:A, 3chp:A, 3chq:A, 3chr:A, 3chs:A, 4dpr:A, 6enb:A, 6enc:A, 6end:A, 3fh5:A, 3fh7:A, 3fh8:A, 3fhe:A, 3fts:A, 3ftu:A, 3ftv:A, 3ftw:A, 3ftx:A, 3fty:A, 3ftz:A, 3fu0:A, 3fu3:A, 3fu5:A, 3fu6:A, 3fud:A, 3fue:A, 3fuf:A, 3fuh:A, 3fui:A, 3fuj:A, 3fuk:A, 3ful:A, 3fum:A, 3fun:A, 5fwq:A, 1gw6:A, 1h19:A, 1hs6:A, 7kze:A, 7kze:B, 7kze:C, 4l2l:A, 7llq:A, 7llq:B, 7llq:C, 4mkt:A, 4ms6:A, 5n3w:A, 5ni2:A, 5ni4:A, 5ni4:B, 5ni4:C, 5ni6:A, 5nia:A, 5nid:A, 5nie:A, 5nie:B, 5nie:C, 6o5h:A, 6o5h:B, 6o5h:C, 8qow:A, 8qpn:A, 8qq4:A, 2r59:A, 4r7l:A, 4rsy:A, 4rvb:A, 8rx3:A, 8rx7:A, 8rx9:A, 1sqm:A, 8twx:A, 8twx:B, 8twx:C, 3u9w:A, 2vj8:A
4 7aoi:XH 402 170 0.0817 0.0920 0.2176 0.57
5 8b0i:C 242 104 0.0596 0.1116 0.2596 1.1
6 7aih:Ad 207 41 0.0309 0.0676 0.3415 1.7 7am2:Ad, 7ane:Ad
7 4i9x:D 108 60 0.0375 0.1574 0.2833 3.1
8 4m59:A 687 107 0.0464 0.0306 0.1963 9.1 4m59:B, 4oe1:A, 4oe1:B
9 4v8p:BW 110 25 0.0199 0.0818 0.3600 9.7 4v8p:CW, 4v8p:EW, 4v8p:GW

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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