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BioLiP
>protein
DPVLCFTQYEESSGKCKGLLGGGVSVEDCCLNTAFAYQKRSGGLCQPCRSPRWSLWSTWAPCSVTCSEGSQLRYRRCVGW
NGQCSGKVAPGTLEWQLQACEDQQCCPEMGGWSGWGPWEPCSVTCSKGTRTRRRACNHPAPKCGGHCPGQAQESEACDTQ
QVC

The query sequence (length=163) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6rus:A 234 163 1.0000 0.6966 1.0000 7.93e-115 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
2 7yyk:A 114 110 0.2883 0.4123 0.4273 4.07e-20 1lsl:A
3 7yyk:A 114 51 0.1656 0.2368 0.5294 6.93e-10 1lsl:A
4 6qig:A 581 52 0.1656 0.0465 0.5192 1.08e-08 3ghm:A, 3ghn:A, 3vn4:A
5 6qig:A 581 54 0.1104 0.0310 0.3333 2.7 3ghm:A, 3ghn:A, 3vn4:A
6 6rus:B 220 55 0.1595 0.1182 0.4727 3.42e-08 7b26:B, 7noz:D, 8q6r:D, 8q6r:F, 6rur:V, 6rur:Y, 6ruv:V, 6ruv:Y, 6rv6:B, 6s08:A, 6s0a:A, 6s0b:A, 6sej:B
7 6rus:B 220 120 0.2393 0.1773 0.3250 5.75e-06 7b26:B, 7noz:D, 8q6r:D, 8q6r:F, 6rur:V, 6rur:Y, 6ruv:V, 6ruv:Y, 6rv6:B, 6s08:A, 6s0a:A, 6s0b:A, 6sej:B
8 6rus:B 220 102 0.2147 0.1591 0.3431 2.98e-04 7b26:B, 7noz:D, 8q6r:D, 8q6r:F, 6rur:V, 6rur:Y, 6ruv:V, 6ruv:Y, 6rv6:B, 6s08:A, 6s0a:A, 6s0b:A, 6sej:B
9 6ool:A 244 51 0.1595 0.1066 0.5098 3.52e-08
10 6ool:A 244 27 0.0798 0.0533 0.4815 1.6
11 7za1:E 251 49 0.1288 0.0837 0.4286 4.11e-05 7za1:F, 7za1:H, 7za2:E, 7za2:G, 7za3:E, 7za3:G
12 7za1:E 251 27 0.0736 0.0478 0.4444 3.5 7za1:F, 7za1:H, 7za2:E, 7za2:G, 7za3:E, 7za3:G
13 7nyc:C 809 49 0.1411 0.0284 0.4694 1.63e-04 7nyd:C
14 7nyc:C 809 52 0.1104 0.0222 0.3462 3.8 7nyd:C
15 8ckk:B 121 49 0.1227 0.1653 0.4082 1.64e-04 8ckg:A, 8ckg:B, 8ckk:A, 8ckl:A, 8ckl:B
16 8ckk:B 121 82 0.1534 0.2066 0.3049 0.052 8ckg:A, 8ckg:B, 8ckk:A, 8ckl:A, 8ckl:B
17 7r84:A 52 50 0.1166 0.3654 0.3800 0.002 7r84:C, 7r84:D
18 7r84:A 52 25 0.0736 0.2308 0.4800 1.9 7r84:C, 7r84:D
19 4hqo:A 257 41 0.1104 0.0700 0.4390 0.004 4hql:A, 4hql:B, 4hqn:A, 4hqn:B
20 4a5w:B 871 49 0.1227 0.0230 0.4082 0.006
21 4a5w:B 871 84 0.1411 0.0264 0.2738 1.0
22 4e0s:B 898 49 0.1227 0.0223 0.4082 0.006 7nyc:B, 7nyd:B
23 4e0s:B 898 84 0.1411 0.0256 0.2738 1.1 7nyc:B, 7nyd:B
24 3t5o:A 871 49 0.1227 0.0230 0.4082 0.006
25 3t5o:A 871 84 0.1411 0.0264 0.2738 1.1
26 7nyd:E 484 35 0.0982 0.0331 0.4571 0.008 7nyc:E
27 8b0f:E 513 35 0.0982 0.0312 0.4571 0.009 3ojy:A
28 7r84:B 45 28 0.0859 0.3111 0.5000 0.010 7r85:A, 7r86:C
29 7r84:B 45 25 0.0736 0.2667 0.4800 2.4 7r85:A, 7r86:C
30 5foe:B 435 53 0.1227 0.0460 0.3774 0.031 5foe:A
31 5foe:B 435 52 0.0982 0.0368 0.3077 0.034 5foe:A
32 7nyc:D 487 52 0.1288 0.0431 0.4038 0.035 7nyd:D
33 7r86:D 40 25 0.0798 0.3250 0.5200 0.039
34 7r86:D 40 25 0.0736 0.3000 0.4800 3.1
35 3ojy:B 504 39 0.0920 0.0298 0.3846 1.3 8b0f:D
36 4r6l:A 473 101 0.1656 0.0571 0.2673 2.4 4e04:A, 4e04:B, 4r6l:B, 4s21:A, 4s21:B
37 6qun:O 334 32 0.0920 0.0449 0.4688 2.4 6qun:R, 6quq:O, 6quq:R, 4z0h:O, 4z0h:R
38 8bot:A 3528 27 0.0675 0.0031 0.4074 9.7
39 7nfc:A 3562 27 0.0675 0.0031 0.4074 9.7 8bh3:S, 8bh3:A, 8bhv:A, 8bhv:F, 8bhy:A, 8bhy:S, 8bot:F, 8bot:S, 7nfc:F
40 7k1j:A 3584 27 0.0675 0.0031 0.4074 9.7 7k19:A
41 7nfe:A 3585 27 0.0675 0.0031 0.4074 9.7
42 7k1k:A 3604 27 0.0675 0.0031 0.4074 9.7 7k1b:A
43 7k1n:A 3634 27 0.0675 0.0030 0.4074 9.7 7z88:A
44 5y3r:C 3636 27 0.0675 0.0030 0.4074 9.7
45 7k17:B 3645 27 0.0675 0.0030 0.4074 9.7 7k17:A
46 7otm:A 3656 27 0.0675 0.0030 0.4074 9.7 7otp:A, 7otv:A, 7otw:A, 7oty:A
47 8ez9:L 3662 27 0.0675 0.0030 0.4074 9.7 8ez9:C
48 7k0y:A 3669 27 0.0675 0.0030 0.4074 9.7
49 7z87:A 3689 27 0.0675 0.0030 0.4074 9.7
50 6zha:A 3707 27 0.0675 0.0030 0.4074 9.7 6zh8:A
51 8eza:L 3720 27 0.0675 0.0030 0.4074 9.7 8eza:C, 7lt3:C, 7lt3:L
52 8ezb:C 3724 27 0.0675 0.0030 0.4074 9.7 8ezb:L
53 6zhe:F 3731 27 0.0675 0.0029 0.4074 9.7
54 7sud:A 3740 27 0.0675 0.0029 0.4074 9.7
55 6zhe:A 3768 27 0.0675 0.0029 0.4074 9.7
56 7su3:A 3802 27 0.0675 0.0029 0.4074 9.7
57 7sgl:A 3852 27 0.0675 0.0029 0.4074 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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