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BioLiP
>protein
DPVLCFTQYEESSGKCKGLLGGGVSVEDCCLNTAFAYQKRSGGLCQPCRSPRWSLWSTWAPCSVTCSEGSQLRYRRCVGW
NGQCSGKVAPGTLEWQLQACEDQQACP

The query sequence (length=107) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6rus:A 234 107 0.9907 0.4530 0.9907 1.05e-71 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
2 6rus:A 234 55 0.2336 0.1068 0.4545 3.33e-06 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
3 6rus:A 234 61 0.1776 0.0812 0.3115 4.1 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
4 7yyk:A 114 55 0.2150 0.2018 0.4182 4.09e-04 1lsl:A
5 7yyk:A 114 55 0.2150 0.2018 0.4182 0.015 1lsl:A
6 5foe:B 435 34 0.1495 0.0368 0.4706 0.005 5foe:A
7 6ool:A 244 27 0.1215 0.0533 0.4815 0.21
8 4e0s:B 898 23 0.1028 0.0122 0.4783 0.39 7nyc:B, 7nyd:B
9 4a5w:B 871 23 0.1028 0.0126 0.4783 0.41
10 3t5o:A 871 23 0.1028 0.0126 0.4783 0.42
11 7za1:E 251 27 0.1121 0.0478 0.4444 0.60 7za1:F, 7za1:H, 7za2:E, 7za2:G, 7za3:E, 7za3:G
12 7r84:A 52 25 0.1121 0.2308 0.4800 0.76 7r84:C, 7r84:D
13 7r84:B 45 25 0.1121 0.2667 0.4800 0.95 7r85:A, 7r86:C
14 6qig:A 581 57 0.1869 0.0344 0.3509 1.0 3ghm:A, 3ghn:A, 3vn4:A
15 7r86:D 40 25 0.1121 0.3000 0.4800 1.2
16 8gna:A 1188 16 0.0748 0.0067 0.5000 1.2
17 6cxo:A 465 60 0.1963 0.0452 0.3500 2.4 6cxo:B
18 6qun:O 334 32 0.1402 0.0449 0.4688 5.4 6qun:R, 6quq:O, 6quq:R, 4z0h:O, 4z0h:R
19 3nhe:A 338 26 0.1121 0.0355 0.4615 5.5 6dgf:A, 2ibi:A, 3v6c:A, 3v6e:A, 5xu8:A, 5xve:A
20 8eih:D 256 32 0.1308 0.0547 0.4375 6.4
21 6gjc:A 2770 57 0.1682 0.0065 0.3158 6.5 6gjc:B, 6gjc:C, 6gjc:D, 6gjc:E, 6gjc:F
22 4hqo:A 257 20 0.0935 0.0389 0.5000 6.8 4hql:A, 4hql:B, 4hqn:A, 4hqn:B
23 6sg9:F4 541 37 0.1028 0.0203 0.2973 7.9 6sgb:F4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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