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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DPVHFYETSYKYQAADSTYMHDVAINVSIKGNHFTSDIIIRELVKSENKNYYNVIGHGDIIQKNTHQYYLNFDNIDVYTG
TNKANMKPYKEPTSISSLINKSNNIRVVYLSEEYVVVEFFFYDGQIITLHRY

The query sequence (length=132) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8dml:B 133 132 1.0000 0.9925 1.0000 2.53e-94 8dml:D, 8dml:F, 8dml:H, 5kew:B, 5kew:D, 5kew:F
2 4qbz:A 754 88 0.1742 0.0305 0.2614 0.42 5awa:A, 5awb:A, 5awc:A, 5awc:B, 5awc:C, 5awc:D, 5awd:A, 5az5:A, 5az5:B, 5az5:C, 5az5:D, 7crf:A, 7crf:B, 6kya:A, 6kya:B, 4qbz:B, 4qc0:A, 4qc0:B, 4r07:A, 4r07:B, 4r07:C, 4r07:D, 4r08:A, 4r08:B, 4r08:C, 4r08:D, 4r09:A, 4r09:B, 4r09:C, 4r09:D, 4r0a:A, 7r52:B, 7r53:A, 7r53:B, 7r54:A, 7r54:B, 4r6a:A, 4r6a:B, 7rc9:A, 7rc9:B, 6ty5:A, 6ty5:B, 6v9u:A, 6v9u:B, 3w3g:A, 3w3j:A, 3w3j:B, 3w3k:A, 3w3k:B, 3w3l:A, 3w3l:B, 3w3l:D, 3w3l:C, 3w3m:A, 3w3n:A, 3w3n:B, 6wml:A, 6wml:B, 6wml:C, 6wml:D, 3wn4:A, 5wyx:A, 5wyx:B, 5wyz:A, 5wyz:B, 7ytx:A, 7ytx:B, 5z14:A, 5z14:B, 5z15:A, 5z15:B, 6zjz:A, 6zjz:B
3 3ne8:A 226 45 0.1136 0.0664 0.3333 6.8
4 3fcp:A 356 46 0.1061 0.0393 0.3043 7.5 3fcp:B, 3fcp:C, 3fcp:D, 3fcp:E, 3fcp:F, 3fcp:G, 3fcp:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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