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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DPVFVKDDDGYDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEKLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALN
RNSDRSIPMTVDFIRKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVACLFIKRTPLWNGFKADFV
GFSIPDHFVVGYSLDYNEIFRDLDHCCLVNDEGKKK

The query sequence (length=196) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2vfa:B 205 200 1.0000 0.9561 0.9800 9.28e-142 2vfa:A
2 1bzy:A 214 207 0.7806 0.7150 0.7391 2.97e-106 6bnj:A, 6bnj:B, 6bnj:C, 6bnj:D, 5brn:A, 5brn:C, 5brn:D, 1bzy:B, 1bzy:C, 1bzy:D, 1d6n:A, 1d6n:B, 3gep:A, 3gep:B, 3ggc:A, 3ggc:B, 3ggj:A, 3ggj:B, 5hia:A, 5hia:B, 5hia:C, 5hia:D, 1hmp:A, 1hmp:B, 4ijq:A, 4ijq:B, 4ijq:C, 4ijq:D, 4rab:A, 4rab:B, 4rab:C, 4rab:D, 4rac:A, 4rac:B, 4rac:C, 4rac:D, 4rad:A, 4rad:B, 4rad:C, 4rad:D, 4rad:E, 4rad:F, 4rad:G, 4rad:H, 4ran:A, 4ran:B, 4ran:C, 4ran:D, 4rao:A, 4rao:B, 4rao:C, 4rao:D, 4raq:A, 4raq:B, 4raq:C, 4raq:D, 7san:A, 7san:B, 7san:C, 7san:D, 8tpv:A, 8tpv:B, 8tpv:C, 8tpv:D, 5w8v:A, 5w8v:B, 5w8v:C, 5w8v:D
3 5brn:B 194 194 0.7347 0.7423 0.7423 1.94e-99 5bsk:A, 5bsk:B, 5bsk:C, 5bsk:D, 4kn6:A, 8tpy:A, 8tpy:B, 8tpy:C, 8tpy:D
4 3ozf:B 234 211 0.6888 0.5769 0.6398 1.27e-87 1cjb:A, 1cjb:B, 1cjb:C, 1cjb:D, 3ozf:A, 3ozf:C, 3ozf:D, 3ozg:A, 3ozg:B, 3ozg:C, 3ozg:D, 7tux:A, 7tux:B, 7tux:C, 7tux:D
5 6bo7:A 220 201 0.5918 0.5273 0.5771 5.57e-78 6bo7:B, 6bo7:C, 6bo7:D, 6bo7:E, 6bo7:F, 6bo7:G, 6bo7:H, 6bo7:I, 6bo7:J, 6bo7:K, 6bo7:L
6 2jbh:B 213 207 0.5765 0.5305 0.5459 1.37e-75 2jbh:A
7 5ipf:A 201 200 0.4592 0.4478 0.4500 1.94e-52 5ipf:B, 5ipf:C, 5ipf:D
8 1fsg:A 233 211 0.4082 0.3433 0.3791 6.46e-47 1dbr:A, 1dbr:B, 1dbr:D, 1fsg:C, 1qk3:A, 1qk3:B, 1qk3:C, 1qk3:D, 1qk4:A, 1qk4:B, 1qk4:C, 1qk4:D, 1qk5:A, 1qk5:B
9 6igs:B 167 163 0.2755 0.3234 0.3313 4.42e-28 6igs:A, 6igs:C, 6igs:D
10 5knx:B 176 177 0.2857 0.3182 0.3164 2.47e-23 1g9s:A, 1g9s:B, 1g9t:A, 1g9t:B, 1grv:B, 1grv:A, 1j7j:A, 1j7j:B, 5knr:A, 5knr:B, 5kns:A, 5kns:B, 5knt:A, 5knt:B, 5knu:A, 5knu:B, 5knv:A, 5knv:B, 5knx:A
11 4qyi:B 171 167 0.2857 0.3275 0.3353 2.92e-23 4qyi:A, 4qyi:C, 4qyi:D, 4qyi:E
12 6mxc:C 220 149 0.2755 0.2455 0.3624 2.12e-21 6aqo:A, 6aqo:B, 6aqo:C, 6aqo:D, 6aqo:E, 6aqo:F, 6ar9:A, 6ar9:B, 6ar9:C, 6ar9:D, 6ar9:E, 6ar9:F, 6mxb:A, 6mxb:B, 6mxb:C, 6mxb:D, 6mxb:E, 6mxb:F, 6mxc:A, 6mxc:B, 6mxc:D, 6mxc:E, 6mxc:F, 6mxd:A, 6mxd:B, 6mxd:C, 6mxd:D, 7scr:A, 7scr:C, 7scr:B, 7scr:D, 7scr:E, 7scr:F
13 3kb8:A 201 187 0.3214 0.3134 0.3369 4.21e-21 6d9r:A, 6d9r:B, 6d9s:A, 6d9s:B, 3h83:A, 3h83:B, 3kb8:B
14 4pfq:C 184 179 0.2806 0.2989 0.3073 5.08e-21 4pfq:A, 4pfq:B, 4pfq:D, 4pfq:E, 4pfq:F, 4pfq:G, 4pfq:H
15 2geb:A 184 181 0.2806 0.2989 0.3039 9.91e-20 1r3u:A, 1r3u:B, 1yfz:A, 1yfz:B
16 3acc:A 166 160 0.2602 0.3072 0.3187 1.91e-19 3acd:A
17 1p17:B 204 190 0.2959 0.2843 0.3053 1.56e-18 1i0i:A, 1i0i:B, 1i0l:A, 1i0l:B, 1i13:A, 1i13:B, 1i14:A, 1i14:B, 1p17:A, 1p17:C, 1p17:D, 1p18:A, 1p18:B, 1p19:A, 1p19:B, 1p19:C, 1p19:D, 1tc1:A, 1tc1:B, 1tc2:A, 1tc2:B
18 8fx3:B 223 144 0.2398 0.2108 0.3264 4.73e-18 8fwy:A, 8fwy:B, 8fwz:A, 8fwz:B, 8fx0:A, 8fx0:B, 8fx1:A, 8fx1:B, 8fx2:A, 8fx2:B, 8fx3:A
19 5kny:B 187 185 0.2755 0.2888 0.2919 2.41e-16 5knp:A, 5knp:B, 5knp:C, 5knp:D, 5knq:A, 5knq:B, 5knq:C, 5knq:D, 5kny:A, 5kny:C, 5kny:D, 4rht:A, 4rht:B, 4rht:C, 4rht:D, 4rhu:A, 4rhu:B, 4rhu:C, 4rhu:D, 4rhu:E, 4rhu:F, 4rhx:A, 4rhx:B, 4rhx:C, 4rhx:D, 4rhy:A, 4rhy:B, 4rhy:C, 4rhy:D
20 7cmj:A 184 147 0.2296 0.2446 0.3061 3.27e-16 1pzm:A, 1pzm:B
21 1hgx:A 164 163 0.2653 0.3171 0.3190 7.73e-16
22 5esw:A 190 181 0.2704 0.2789 0.2928 8.35e-16 5esx:A, 5esx:B
23 6aps:A 185 174 0.2449 0.2595 0.2759 1.80e-15 6aps:B, 6apt:A, 6apt:B, 6apu:A, 6apu:B, 6apv:A, 6apv:B, 6apv:C, 6apv:D, 5jsq:A, 5jsq:B, 5jv5:A, 5jv5:B, 5k51:A, 5k51:B, 5k51:C, 5k51:D, 5kam:A, 5kam:C, 5kap:A, 5kap:B, 6mxg:A, 6mxg:B, 7sb7:A, 7sb7:B, 8tr1:A, 8tr1:B, 8tr1:C, 8tr1:D, 8ts4:A, 8ts4:B
24 4zfn:B 177 55 0.1020 0.1130 0.3636 1.42e-05 5bqp:A, 5bqp:B, 5bqp:C, 5bqp:D, 4z1o:A, 4z1o:B, 4zfn:A
25 4p86:A 177 157 0.1939 0.2147 0.2420 0.015 4p86:B, 4p86:C, 4p86:D
26 2igb:B 173 61 0.0969 0.1098 0.3115 0.031 2igb:A, 4p83:A, 4p83:B, 4p83:C, 4p83:D, 1xz8:A, 1xz8:B, 1xzn:A, 1xzn:B
27 1u9z:A 274 36 0.0765 0.0547 0.4167 0.037 1u9z:B, 1u9z:C, 1u9z:D
28 5kwi:A 283 52 0.0969 0.0671 0.3654 0.060 5kwj:A, 5kwj:B, 5ocj:A, 5ocj:B, 4qe3:A, 4qek:A, 5vns:A
29 5hkl:A 168 55 0.0867 0.1012 0.3091 0.070 5hkf:A
30 5hkf:B 166 55 0.0867 0.1024 0.3091 0.076
31 4trb:B 209 40 0.0867 0.0813 0.4250 0.19 4trc:A, 4trc:B, 4ts5:A, 4ts5:B, 4ts7:A, 4ts7:B
32 7kl6:A 147 76 0.1071 0.1429 0.2763 0.32
33 7rmw:A 270 38 0.0612 0.0444 0.3158 0.43 1p4a:A, 1p4a:B, 1p4a:C, 1p4a:D, 7rmw:B, 7rmw:C, 7rmw:F
34 5znq:A 183 47 0.0816 0.0874 0.3404 0.47 5b6h:A, 5y07:A, 5y07:B, 5zc7:A, 5zc7:B, 5zmi:A, 5znq:B, 5zoc:A
35 2jky:A 207 45 0.0765 0.0725 0.3333 0.84 2jky:B, 2jkz:A, 2jkz:B, 2jkz:C, 2jkz:D, 2xbu:A, 2xbu:B
36 2r0m:A 390 52 0.0714 0.0359 0.2692 1.0 2r0n:A, 1siq:A, 1sir:A
37 3mbi:A 287 39 0.0714 0.0488 0.3590 1.4 3lpn:A, 3lpn:B, 3lrt:A, 3lrt:B, 3mbi:C, 3mbi:B, 3mbi:D, 3nag:A, 3nag:B
38 4m9a:B 376 73 0.1020 0.0532 0.2740 1.5 4m9a:A
39 4twb:A 278 41 0.0765 0.0540 0.3659 1.9 4twb:B, 4twb:C, 4twb:D, 4twb:E, 4twb:F
40 2xkk:C 711 80 0.1224 0.0338 0.3000 2.3 2xkk:A
41 4rv4:B 211 38 0.0561 0.0521 0.2895 2.4 4rv4:A, 4rv4:C
42 4c1n:A 442 103 0.1327 0.0588 0.2524 2.4 4c1n:C, 4c1n:E, 4c1n:G, 2h9a:A, 2ycl:A
43 7arc:B 154 84 0.1173 0.1494 0.2738 3.0 7ard:B
44 6asv:C 311 66 0.0969 0.0611 0.2879 3.0 6asv:A, 6asv:B, 4s2u:A, 7xmu:A, 7xmu:F, 7xmu:C, 7xmu:D, 7xmu:B, 7xmu:E, 7xmv:A, 7xmv:F, 7xmv:C, 7xmv:E, 7xmv:B, 7xmv:D, 7xn3:A, 7xn3:E, 7xn3:C, 7xn3:B, 7xn3:D, 7xn3:F
45 1ibs:B 299 76 0.0918 0.0602 0.2368 3.6 1dku:A, 1dku:B, 1ibs:A
46 3hzh:A 134 42 0.0765 0.1119 0.3571 3.9
47 5g1n:E 307 58 0.0816 0.0521 0.2759 4.3 5g1n:A, 5g1n:B, 5g1n:C, 5g1n:D, 5g1n:F, 5g1p:A, 5g1p:B, 5g1p:C, 5g1p:D, 5g1p:E, 5g1p:F
48 1ecf:B 500 35 0.0663 0.0260 0.3714 4.9 6czf:A, 6czf:C, 6czf:B, 6czf:D, 1ecb:A, 1ecb:B, 1ecb:C, 1ecb:D, 1ecc:A, 1ecc:B, 1ecf:A, 1ecg:A, 1ecg:B, 1ecj:A, 1ecj:C, 6ott:A, 6ott:B, 8w7d:A, 8w7d:B, 8w7d:C, 8w7d:D
49 8izj:B 183 38 0.0561 0.0601 0.2895 5.3 8izj:A, 7y94:A, 7y94:B
50 5ief:A 858 25 0.0561 0.0128 0.4400 6.2 5h9o:A, 5h9o:C, 5hjo:A, 5hjo:C, 5hjr:A, 5hjr:C, 5ied:A, 5iee:A, 5ieg:A, 7jty:A, 7jty:C, 7k9n:A, 7k9n:C, 7k9o:A, 7k9o:C, 7k9q:A, 7k9q:C, 7k9t:A, 7k9t:C, 7kad:A, 7kad:C, 7kb6:A, 7kb6:C, 7kb8:A, 7kb8:C, 7kbj:A, 7kbj:C, 7kbr:A, 7kbr:C, 7kry:A, 7kry:C
51 7l7b:D 1148 65 0.1173 0.0200 0.3538 7.2
52 2akj:A 535 127 0.1224 0.0449 0.1890 7.9
53 8q0j:B 158 84 0.1020 0.1266 0.2381 8.8 7ak5:B, 7ak6:B, 7b93:B, 8c2s:B, 8ca3:B, 8ca5:B, 7dgq:D, 7dgr:D, 7dgs:D, 7dgz:D, 7dh0:D, 7dkf:D2, 6g2j:B, 6g72:B, 5gpn:a, 5gup:I, 8iao:B, 8iap:B, 8ib4:B, 8ib5:B, 8ib9:B, 8iba:B, 8ibd:B, 8ibe:B, 8ic2:B, 8ic3:B, 5lc5:B, 5ldw:B, 5ldx:B, 5lnk:6, 5o31:B, 8olt:B, 8om1:B, 7psa:B, 8pw5:6, 8pw6:6, 8pw7:6, 8q0a:B, 8q0f:B, 8q0m:B, 8q0o:B, 8q0q:B, 8q1p:B, 8q1u:B, 8q1y:B, 8q25:B, 8q45:B, 8q46:B, 8q47:B, 8q48:B, 8q49:B, 8q4a:B, 6q9d:S7, 6qa9:S7, 6qbx:S7, 6qc2:S7, 6qc3:S7, 6qc4:S7, 6qc5:S7, 6qc6:S7, 6qc7:S7, 6qc8:S7, 6qc9:S7, 6qca:S7, 6qcf:S7, 7qsd:B, 7qsk:B, 7qsl:B, 7qsm:B, 7qsn:B, 7qso:B, 7r41:B, 7r42:B, 7r43:B, 7r44:B, 7r45:B, 7r46:B, 7r47:B, 7r48:B, 7r4c:B, 7r4d:B, 7r4f:B, 7r4g:B, 8rgp:6, 8rgq:6, 8rgr:6, 8rgt:6, 8ud1:1B, 8ueo:1B, 8uep:1B, 8ueq:1B, 8uer:1B, 8ues:1B, 8uet:1B, 8ueu:1B, 8uev:1B, 8uew:1B, 8uex:1B, 8uey:1B, 8uez:1B, 8ugh:1B, 8ugi:1B, 8ugj:1B, 8ugn:1B, 8ugn:5B, 8ugp:1B, 8ugr:1B, 8ugr:5B, 7v2c:C, 7v2d:C, 7v2e:C, 7v2f:C, 7v2h:C, 7v2k:C, 7v2r:C, 7v30:C, 7v31:C, 7v32:C, 7v33:C, 7v3m:C, 7vb7:C, 7vbn:C, 7vbz:C, 7vwj:C, 7vxp:C, 7vxu:C, 7vy8:C, 7vya:C, 7vyf:C, 7vyh:C, 7vyn:C, 7vz1:C, 7vzv:C, 7vzw:C, 7w00:C, 7w0h:C, 7w0r:C, 7w0y:C, 7w1o:C, 7w1p:C, 7w1t:C, 7w1u:C, 7w1v:C, 7w1z:C, 7w20:C, 7w2k:C, 7w2l:C, 7w2r:C, 7w2u:C, 7w2y:C, 7w31:C, 7w32:C, 7w35:C, 7w4c:C, 7w4d:C, 7w4e:C, 7w4f:C, 7w4g:C, 7w4j:C, 7w4k:C, 7w4l:C, 7w4m:C, 7w4n:C, 7w4q:C, 5xtb:C, 5xtd:C, 5xth:C, 5xti:C, 5xti:BC, 7zd6:6, 7zdh:6, 7zdj:6, 7zdm:6, 7zdp:6, 7zeb:6, 6zk9:6, 6zkc:6, 6zkd:6, 6zke:6, 6zkf:6, 6zkg:6, 6zkh:6, 6zki:6, 6zkj:6, 6zkk:6, 6zkl:6, 6zkm:6, 6zkn:6, 6zko:6, 6zkp:6, 6zkq:6, 6zkr:6, 6zks:6, 6zkt:6, 6zku:6, 6zkv:6, 6zr2:B, 6ztq:B
54 5z9x:A 288 45 0.0561 0.0382 0.2444 8.9
55 5vog:A 176 44 0.0816 0.0909 0.3636 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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